LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi233g00033	ATGGATTACGCTACAGAATTTTCCATGGATCGTCGTCCTCGAAAAAGAGCTAAATTGGCTTGGGAACTTCCTCAAACCCACTCAAAGGCTCATTCGGGGATGTATTATGGACAAGAGTTTGCTAATGTGACAACAAGCTATGGGACGTTGAGAGTACTTCCTGACCAAGGTGGTCTGTCGATAAAAGGATTGGCGGAAAAAGGTTCTCCTCAATGGCGAGAGGATGATAAAGATGGACATTACATGTTTGCGCTTGGGGAAAATTTAACTTCTCGGTATAAGATCCTCAGGAAAATCGGTGAAGGGACTTTCGGTCAGGTTTTGGAATGCTGGGACAGAGAAATGAGGGAGGTAGTTGCTATAAAAGTTGTGAGGAGTATAAAGAAATATCGTGAAGCAGCAATGTTAGAAGTTGATGTGCTCCAGTTGCTTGGGAAGTATGACAGGAATGGCAATCGCTGTGTTCAAATACGCAACTGGTTTGACTACCGGAACCATATTTGTATTGTATTTGAGATGCTTGGACCAAGCTTATATGATTTTCTCCGGAAGAACAATTATCGCCCGTTTCCGGTTGATCTTGTCCGCGAGCTAGGAAGACAATTGTTGGAAAGTGTAGCATTTGTACATGATATGCGCCTCATCCACACTGACTTGAAGCCTGAGAATATACTTTTTATTTCCCCAGAATATGTAAAAGTGCCTGACTACAAGGTCATGTTCCGGTCGCCAAAAGAGGGAGCCTCTTATAAAAGACTGCCAAAATCAAGTGCTATTAAGGTTATTGATTTTGGTAGTACTGCTTATGAGCACCAAGATCACAACTATATTGTCTCTACTAGGCATTATAGGGCCCCTGAGGTTATTCTTGGACTTGGTTGGGGTTTTCCTTGTGACATATGGAGTATTGGTTGCATTTTGGTTGAGTTGTGCTCGGGAGAAGCTTTGTTTCAGACGCATGAGAATTTAGAGCATCTAGCTATGATGGAGAGGGTTTTAGGCCCAATGCCTCAGGACATGTTGAAAAGAGCAGACCGCCCCGCAGAGAAGTATGTCAGAAGAGATAGACTAAACTGGCCCGAAGGAGCAGTCTCCCGAGAAAGCATCAAAGCTGTCTTGAAACTACCCCGTCTTCCTAATCTGGTGATGCAGCATGTGGATCACTCGGCTGGGGATCTTCTTGATCTTTTGCAGGGTCTACTTCGGTTTGATCCCATGAGCAGGATGAAGGCTCATGAAGCACTCAGACATCCCTTTTTTACTGGGGGGCATTACCAGAGGTATTAA	1287	0.4421	MDYATEFSMDRRPRKRAKLAWELPQTHSKAHSGMYYGQEFANVTTSYGTLRVLPDQGGLSIKGLAEKGSPQWREDDKDGHYMFALGENLTSRYKILRKIGEGTFGQVLECWDREMREVVAIKVVRSIKKYREAAMLEVDVLQLLGKYDRNGNRCVQIRNWFDYRNHICIVFEMLGPSLYDFLRKNNYRPFPVDLVRELGRQLLESVAFVHDMRLIHTDLKPENILFISPEYVKVPDYKVMFRSPKEGASYKRLPKSSAIKVIDFGSTAYEHQDHNYIVSTRHYRAPEVILGLGWGFPCDIWSIGCILVELCSGEALFQTHENLEHLAMMERVLGPMPQDMLKRADRPAEKYVRRDRLNWPEGAVSRESIKAVLKLPRLPNLVMQHVDHSAGDLLDLLQGLLRFDPMSRMKAHEALRHPFFTGGHYQRY	428

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi233g00033	428	FunFam	Serine/threonine-protein kinase AFC2	169	420	-	-
	Vivi233g00033	428	Gene3D	Phosphorylase Kinase; domain 1	80	173	-	-
	Vivi233g00033	428	CDD	PKc_CLK	80	420	-	-
	Vivi233g00033	428	ProSitePatterns	Protein kinases ATP-binding region signature.	99	129	IPR017441	GO:0005524
	Vivi233g00033	428	Pfam	Protein kinase domain	93	420	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi233g00033	428	PANTHER	SERINE/THREONINE-PROTEIN KINASE DOA-RELATED	8	422	-	-
	Vivi233g00033	428	Gene3D	Transferase(Phosphotransferase) domain 1	147	420	-	-
	Vivi233g00033	428	ProSiteProfiles	Protein kinase domain profile.	93	420	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi233g00033	428	SMART	serkin_6	93	420	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi233g00033	428	SUPERFAMILY	Protein kinase-like (PK-like)	80	424	IPR011009	-
	Vivi233g00033	428	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	214	226	IPR008271	GO:0004672\|GO:0006468

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi233g00033	93	420	Core Cell Cycle Gene Families	AT1G76540	25.369	3.30e-27	108

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CLK	Vivi233g00033		Pkinase	4.1e-48	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi233g00033	K08287		-	qsa:O6P43_023145	745.732