Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi233g00029 ATGTTAGGAGAAGAAGGTAAAGAGATGAAACCACCCTCCATTAGGAGAACCTATTCACGTTCAGCTTCATGGACAGATCGTTCTCCAAACAGCCGTAAACCACCGCGACCGAGCTTGCCACCTCTTCAACCTCTTTCGATCAATAAACGTAGCGTTGAGGAATGGCCAAGTGCTGGATCTGATGATCTTGGTGTTTGGCCACTTCCACAGACTCCGAGAGGTTCCATCGCAACGAATGAACCTGTGCAGGATTTTCAGTTTAAAAGAGATAAATTGGCTTTTTTTGACAAAGAGTGTTCCAGAATTGCTGAACATATTTACTTAGGAAGTGACACGGTGGCGAAAAACCATGAACTTCTTAGACAGAAAGGAATAACACATGTGCTTAACTGTGTTGGATTTGTTTGTCCTGAGTATTTCAAAAGTGATTTTGTTTATAAAACTCTTTGGTTGCAGGATAGTCCTACGGAGGATATAACATGTGTTCTCTATGATGTGTTTGATTACTTTGAGGATGTTAGAGAACAAGGTGGTCGTGTTCTTGTTCATTGTTGTCAGGGGGTTTCTCGATCGACGGCTTTGGTGATTGCTTATCTCATGTGGAGGAAAGGGCAGAGCTTTGAAGATGCTTTTCAGTTTGTGAAGACTGCAAGGGGAGTCACAAATCCTAACATGGGTTTTGCTTGTCAACTCTTGCAGTGTCAGAAACGTGTACATGCTATGCCTGCAAGTCCTAATTCTATTTTAAGGATGTATCGAATGGCTCCTCACTCTCCGTATGATCCTCTTCATCTTGTTCCGAAGATGGTTAACCAACCAGGTTCACTAGCACTTGATTCTCGCGGCGCTTTCATTGTTCATGTTCCTTCTGCTATTTATGTTTGGATTGGAAAAAATTGTAACTTGTTTATGTCATGCAATGCAAAGAGTGCGGCTTTTCAGGTCGTGCGCTATGAAAGAGCAAATGGTCCGATTCTGAGTATCCGTGAAGATCAAGAATCAACTGAGTTTTGGGCTGCTCTTTCTGATGATCATCGATTATCAGGTGATTCTGATAAACAACTGGTTTTGCCTAATGAAAAGATGGAGATTGGTCTAAGAAAAGTCGATGCTTATGATTTGGATTATGAGATTTTTGATAAGGCAATTTCTGGTGGGGTTGTTCCTCTTTTTTCTGAAACTGGTGCTGGATCGGAAACTTGCCTTCCTGCTAGAGAACATGGCTGGGCAAGATTGAGGCGGAAGTTTGCTAGTGGCGTCATGAAAGAAATCTTAACATCTCCTAAATGGAAGTGTGATGTGATTATGGAGGAAGAAAAACAAGATTTTGTAGCTGATGATGATCCCTTGTCTGCGTCACCGTCATCAAATCATCCCAGTGACTGTGGCTCCCCAGATTCCTTTGAATGCTATCTAACCAGCTTGGACAGAGGAAAAGATACTGTTGAAGCCATGGACTTGTCTGAATCTGATCCTGGTGTTTCTTCTTTGCTGCCACTATCTCCTTGTGGCGGTTATTTTCCTTGTGGTTTTCTATGCAGCAGCCCAAAATTCAATTCCAAATCACCAACACTTTCACCTTCAAGTTCTGATTATGCAAGCTCGTTTACATTTTCACCTTCCTCTACTAATTGGTCAGACTTGTCGTTCGTGTCTTCTCAGCAGCCATCACCATCTGGCCAGGAATCAATTGAACCTTTGTATGTTAAAGATCTGTCTTTCTCAACGAGTTCCTCTTTACTTAACAAAGAAGTTCTTCTATCTTCACCTTCAGAGTCATTTTCAACTGATCACACCTTGGGAGGGGAAAACTCGTATTTACCATCAAAAGGATCTTTTCTCTCTATTGCACAGCGTAGAGGGAGTAATATACCGCCTCGGATGTTGCTACCCTCTGTCAATGAATCCTCTAAAGTCCATAAGAACCTGGAGGAATACACCTACTAA 1947 0.4212 MLGEEGKEMKPPSIRRTYSRSASWTDRSPNSRKPPRPSLPPLQPLSINKRSVEEWPSAGSDDLGVWPLPQTPRGSIATNEPVQDFQFKRDKLAFFDKECSRIAEHIYLGSDTVAKNHELLRQKGITHVLNCVGFVCPEYFKSDFVYKTLWLQDSPTEDITCVLYDVFDYFEDVREQGGRVLVHCCQGVSRSTALVIAYLMWRKGQSFEDAFQFVKTARGVTNPNMGFACQLLQCQKRVHAMPASPNSILRMYRMAPHSPYDPLHLVPKMVNQPGSLALDSRGAFIVHVPSAIYVWIGKNCNLFMSCNAKSAAFQVVRYERANGPILSIREDQESTEFWAALSDDHRLSGDSDKQLVLPNEKMEIGLRKVDAYDLDYEIFDKAISGGVVPLFSETGAGSETCLPAREHGWARLRRKFASGVMKEILTSPKWKCDVIMEEEKQDFVADDDPLSASPSSNHPSDCGSPDSFECYLTSLDRGKDTVEAMDLSESDPGVSSLLPLSPCGGYFPCGFLCSSPKFNSKSPTLSPSSSDYASSFTFSPSSTNWSDLSFVSSQQPSPSGQESIEPLYVKDLSFSTSSSLLNKEVLLSSPSESFSTDHTLGGENSYLPSKGSFLSIAQRRGSNIPPRMLLPSVNESSKVHKNLEEYTY 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi233g00029 648 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 88 240 IPR029021 -
Vivi233g00029 648 ProSiteProfiles Dual specificity protein phosphatase domain profile. 98 240 IPR020422 GO:0006470|GO:0008138
Vivi233g00029 648 MobiDBLite consensus disorder prediction 1 47 - -
Vivi233g00029 648 Gene3D Protein tyrosine phosphatase superfamily 77 240 IPR029021 -
Vivi233g00029 648 SMART dsp_5 98 237 IPR020422 GO:0006470|GO:0008138
Vivi233g00029 648 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 164 218 IPR000387 GO:0016311|GO:0016791
Vivi233g00029 648 ProSitePatterns Tyrosine specific protein phosphatases active site. 182 192 IPR016130 GO:0016311|GO:0016791
Vivi233g00029 648 Gene3D Severin 251 348 IPR029006 -
Vivi233g00029 648 SUPERFAMILY Actin depolymerizing proteins 244 345 - -
Vivi233g00029 648 CDD DSP 99 233 - -
Vivi233g00029 648 MobiDBLite consensus disorder prediction 16 32 - -
Vivi233g00029 648 MobiDBLite consensus disorder prediction 446 465 - -
Vivi233g00029 648 PANTHER MKPA PROTEIN 18 642 - -
Vivi233g00029 648 Pfam Dual specificity phosphatase, catalytic domain 106 236 IPR000340 GO:0008138|GO:0016311
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi233g00029 1 134 Protein tyrosine phosphatase (PTP) family AT3G55270 40.541 9.29e-31 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi233g00029 - - lja:Lj6g3v0574850.1 899.812