Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi233g00016 ATGGGACTTTCAAACTTTCCCTATGCAGCAGAAGGTGTTATGCCTGTGATTGTGATGAACACAGTTTTATCTGTGGTTTTATTGAAGAACATGTTTAGATCGATTCTCCAAGTAGTTGGTTGCACATCAAGTACTATTACTAATTCATCAAATCTTGAAGAAGAAGAAGAAGAACTCTACTATCAAGAGAATAGTAGTTCGAGGGAAAGTAGGGTGTCAATAACACAGTACAAGTCATTGTGTTACAACAGGTCCAACGTAGGTAGAAGTCATATGGTGGAGTGTTGTGTATGTTTGTCTGGTTTTGAAGCAAATCAGGAGGTGAGTGAGTTGCCTTGCAAGCATTTCTTTCATAGAGGTTGTTTAGAGAAATGGTTTGATAATAAGCATAGCTCATGTCCTTTATGTCGTTCTATGGACTAG 423 0.3806 MGLSNFPYAAEGVMPVIVMNTVLSVVLLKNMFRSILQVVGCTSSTITNSSNLEEEEEELYYQENSSSRESRVSITQYKSLCYNRSNVGRSHMVECCVCLSGFEANQEVSELPCKHFFHRGCLEKWFDNKHSSCPLCRSMD 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi233g00016 140 SMART ringv_2 94 137 IPR011016 GO:0008270
Vivi233g00016 140 SMART ring_2 95 136 IPR001841 -
Vivi233g00016 140 SUPERFAMILY RING/U-box 94 138 - -
Vivi233g00016 140 Pfam Ring finger domain 94 137 IPR001841 -
Vivi233g00016 140 ProSiteProfiles Zinc finger RING-type profile. 95 137 IPR001841 -
Vivi233g00016 140 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 47 140 IPR013083 -
Vivi233g00016 140 PANTHER - 1 139 IPR044249 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi233g00016 1 138 C3H Transcription Factor Family AT2G04240 33.766 6.00e-23 86.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi233g00016 K16285 - gmx:100811790 178.718