Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi231g00037 ATGGGTGGTGGTGATGGTGGTGGTGATCATAAAAATGTTTCTATTGTTAAAAAGAAGAAAAAGAAAAATGGTTCTTTTAAGTCCATTTTCATGCATGCTGATATTCTAGATTGGTTCTTCATGTTTTTTGGTTTTTTAGGGGCAATTGGTGATGGCATAATGGTACCTTTGGTGTTGTTTATCACAAGCAAAATTATGAACACTATTGGTAGTGTTTCTGACCCATCAAGCAACCACAATTTTGTCCATAACATCAACAAGAATGCTGTTTTTTTGTTATATTTGGCATGTGCTGCTTTTGTTGCTTGCTTCCTAGAGGGTTATTGTTGGACAAGAACAGGTGAAAGACAAGCTGCAAGAATGAGATCTAGATATTTAAAAGCAGTTCTAAGACAAGAAGTGGGATACTTTGATGTACATGTTACAAGTACATCAGAAGTCATCACCAGTGTCTCTAATGACAGCCTAGTAATTCAAGATGTTCTCAGTGAAAAGGTTCCAAATTTTGTGATGAATGCATCTATGTTCATTGGGAGCTACATAGTGGCATTTGCAATGCTATGGAGATTGGCCATTGTTGGATTCCCTTTTATTGTTCTCCTTGTGATACCTGGTTTAATGTATGGGAGAACTTTGATGGGATTGGCTAGAAAAATCAGAGACGAGTACAATAAAGCCGGTACAATAGCAGAACAAGCAATATCTTCTATCAGAACTGTGTATTCCTTTGCAGGAGAAAACAAAACCATAGCTGCTTTCTCTGATGCCTTAGAAGGATCTGTGAAGTTGGGATTGAAACAAGGCTTAGCTAAAGGTTTAGCCATAGGAAGCAATGGTGTTGTTTTTGCTATATGGTCATTTATGGCATATTATGGTAGCAGGATGGTCATGTATCATGGTGCGAAAGGTGGAACTGTATTTGCAGTTGGAGCTTCACTAGCACTTGGTGGATTGGCTTTAGGCGCCGGTTTATCCAATGTGAAGTACTTTTCAGAAGCAAGCGTAGCCGGCGAAAGAATAATGGATGTGATAAAAAGAGTTCCAAATATAGACTCAGAAAACTTGGAAGGTGAAGTTCTAGAGAAAGTGTCGGGGGAAGTTGAATTCAACCATGTTGAATTTGTGTATCCGTCAAGGCCAGAAAGTATGATCTTAAATGATTTTTGCTTAAAGGTTCCATCAGGTAAAACAGTTGCATTAGTAGGAGGAAGTGGTTCAGGAAAATCAACTGTAATATCGCTTTTGCAAAGGTTTTATGATCCAATTGGTGGAGACATTCTTTTTGATGGAGTTCCTATTCATAAGTTACAACTCAAATGGCTTAGATCTCAAATGGGATTGGTGAGTCAAGAACCTGCTTTGTTTGCAACAAGTATTAAAGAGAATATACTTTTTGGAAGAGAGGATGCTACATATGAAGATGTTGTTGATGCTGCTAAAGCTTCTAATGCTCATAATTTCATTTCAATATTGCCACAAGGATATGATACTCAGGTTGGAGAGAGAGGAGTTCAAATGTCAGGAGGACAAAAGCAAAGGATTGCCATTGCAAGAGCTATAATAAAAATGCCAAAAATTCTATTGCTAGACGAAGCAACAAGTGCACTCGATTCTGAATCCGAACGAGTCGTCCAACAAGCTTTAGACAAAGCATCGGTTGGACGCACCACCATCATCATCGCTCACCGTTTATCCACCATCCAAAATGCAGACATCATTGCAGTCGTTCAAAATGGTAAAATCATGGAAACGGGTTCTCACGAAAGCCTCATGGAAAATGACAATTCTCTATACACTTCCCTCGTTCGTCTCCAACAAACCAGAAATGACCAAAACAATGACACTTCGTCTATCTTGAATAGAGATCGCATGCAAAACACGAGTAGTCGTAGACTCACGAGTCGCTCTAGCTCGTTCAACTCAATGTCACGAGGTGGTGATGATATCGTTAATTATAACAATGATGTTGAAGATATTGTTAATAGCGTTGTTATAGTAGATGATCATCATAATAATAAGAAAAAGAAGAAGGTTGAGGTTCCTTCATTTCGAAGGTTGTTGGCAATGAATTTGCCAGAGTGGAAGCAAGCGTGTTTGGGTTGTTTGAACGCGCTTTTATTCGGCGCGATTCAACCTGTATATGCATTTGCAATGGGGTCGGTTATATCTGTTTATTTCCTGGAGGACCATGATGAGATCAAGAAGCAAATTAGGATCTATGCATTTTGTTTTCTAGGGTTGGCTGTGTCTTCATTGGTTTTTAATGTGCTTCAACATTATAGCTTTGCTTACATGGGAGAATACTTGACTAAAAGGGTTAGAGAAAGAATGCTTTCCAAGATACTCACTTTTGAAGTTGGTTGGTTTGATGAGGATCAAAATTCTACAGGTGCTGTTTGCTCTAGACTTGCCAAAGAAGCCAATGTGGTAAGATCTTTGGTGGGTGATAGATTGGCTCTTGTGGTGCAAACAATCTCAGCAGTGGTAATAGCATTCACAATGGGCCTAGTAATTGCATGGAGACTAGCCATTGTTATGATAGCAGTTCAGCCAATAATCATATGTTGTTTCTACACAAGGCGTGTCCTTCTAAAGAGCATGTCAAGTAAAGCTATTAAGGCTCAAGATGAATGTAGCAAAATAGCTGCTGAAGCTGTTTCAAATCTAAGAACCATAACTTCTTTTTCATCTCAAGATAGAATCCTCAGAATACTGGAAAAAGCCCAACAAGGGCCAAGTCAAGAAAGCATTAGACAGTCTTGGTTTGCAGGTATTGGGCTTGCGTGTTCGCAAAGTCTCAATTTTTGTACTTGGGCTTTGGACTTTTGGTATGGTGGAAAACTTGTGTCACAAGGTTATATTTCGGGTAAGGCGTTGTTCGAGACTTTTATGATCTTGGTAAGCACCGGAAGAGTTATTGCTGATGCCGGTAGCATGACAAATGATCTTGCTAAAGGCTCTGATGCTGTTGGATCTGTTTTCGCAATTCTTGATAGATATACAAAAATCGAGCCCGATGATTTAGAAGGTTACAAAACCGAAAAATTAATAGGAAAAATCGAACTTCATGATGTGCATTTTGCATATCCAGCTAGACCTAATGTGATGATCTTTCAAGGGTTCTCGATTAAAATTGACGCCGGAAAATCAACGGCTTTGGTAGGGGAAAGTGGTTCTGGAAAATCTACAATCATAGGACTAATTGAGAGATTCTATGATCCTTTCAAAGGGACAGTGACAATAGATGGTAGAGACATAAAATCTTATCATCTAAGGTCATTAAGGAAACACATTGCACTTGTGAGTCAAGAACCAACATTGTTTGCTGGTACCATAAGGGAAAATATTGCATATGGAGCATATGATGATAAAGTTAATGAGAGTGAGATTATTGAGGCTGCAAAAGCTGCAAACGCTCATGATTTTATATCAAGCTTAAAAGATGGTTATGAGACATGGTGTGGTGATAGAGGAGTTCAACTTAGTGGTGGTCAAAAACAAAGAATTGCAATAGCAAGAGCTATATTGAAGAATCCGGCGGTGTTACTTTTGGATGAAGCAACAAGTGCACTTGATAGCCAATCGGAGAAACTAGTGCAAGATGCTTTAGAAAGGGTTATGGTTGGAAGGACGAGTGTGGTTGTGGCTCATAGGCTGAGTACTATACAAAACTGTGACTTGATTGCTGTTTTGGATAAGGGAATTGTTGTTGAGAAAGGAACACATTCATCTTTGTTGGCTAAGGGACCGAGTGGAGCTTATTACTCTTTGGTGAGTCTACAAAGAAGACCAACCAACGCAATTGTCCATTCTTCCCATGAAATCAATTAA 3831 0.3902 MGGGDGGGDHKNVSIVKKKKKKNGSFKSIFMHADILDWFFMFFGFLGAIGDGIMVPLVLFITSKIMNTIGSVSDPSSNHNFVHNINKNAVFLLYLACAAFVACFLEGYCWTRTGERQAARMRSRYLKAVLRQEVGYFDVHVTSTSEVITSVSNDSLVIQDVLSEKVPNFVMNASMFIGSYIVAFAMLWRLAIVGFPFIVLLVIPGLMYGRTLMGLARKIRDEYNKAGTIAEQAISSIRTVYSFAGENKTIAAFSDALEGSVKLGLKQGLAKGLAIGSNGVVFAIWSFMAYYGSRMVMYHGAKGGTVFAVGASLALGGLALGAGLSNVKYFSEASVAGERIMDVIKRVPNIDSENLEGEVLEKVSGEVEFNHVEFVYPSRPESMILNDFCLKVPSGKTVALVGGSGSGKSTVISLLQRFYDPIGGDILFDGVPIHKLQLKWLRSQMGLVSQEPALFATSIKENILFGREDATYEDVVDAAKASNAHNFISILPQGYDTQVGERGVQMSGGQKQRIAIARAIIKMPKILLLDEATSALDSESERVVQQALDKASVGRTTIIIAHRLSTIQNADIIAVVQNGKIMETGSHESLMENDNSLYTSLVRLQQTRNDQNNDTSSILNRDRMQNTSSRRLTSRSSSFNSMSRGGDDIVNYNNDVEDIVNSVVIVDDHHNNKKKKKVEVPSFRRLLAMNLPEWKQACLGCLNALLFGAIQPVYAFAMGSVISVYFLEDHDEIKKQIRIYAFCFLGLAVSSLVFNVLQHYSFAYMGEYLTKRVRERMLSKILTFEVGWFDEDQNSTGAVCSRLAKEANVVRSLVGDRLALVVQTISAVVIAFTMGLVIAWRLAIVMIAVQPIIICCFYTRRVLLKSMSSKAIKAQDECSKIAAEAVSNLRTITSFSSQDRILRILEKAQQGPSQESIRQSWFAGIGLACSQSLNFCTWALDFWYGGKLVSQGYISGKALFETFMILVSTGRVIADAGSMTNDLAKGSDAVGSVFAILDRYTKIEPDDLEGYKTEKLIGKIELHDVHFAYPARPNVMIFQGFSIKIDAGKSTALVGESGSGKSTIIGLIERFYDPFKGTVTIDGRDIKSYHLRSLRKHIALVSQEPTLFAGTIRENIAYGAYDDKVNESEIIEAAKAANAHDFISSLKDGYETWCGDRGVQLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQDALERVMVGRTSVVVAHRLSTIQNCDLIAVLDKGIVVEKGTHSSLLAKGPSGAYYSLVSLQRRPTNAIVHSSHEIN 1276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi231g00037 1276 PANTHER ABC TRANSPORTER B FAMILY 16 755 IPR039421 -
Vivi231g00037 1276 Gene3D - 1010 1269 IPR027417 -
Vivi231g00037 1276 MobiDBLite consensus disorder prediction 609 641 - -
Vivi231g00037 1276 FunFam ABC transporter B family member 1 28 366 - -
Vivi231g00037 1276 ProSitePatterns ABC transporters family signature. 1161 1175 IPR017871 GO:0005524|GO:0016887
Vivi231g00037 1276 CDD ABC_MTABC3_MDL1_MDL2 367 605 - -
Vivi231g00037 1276 CDD ABC_MTABC3_MDL1_MDL2 1020 1261 - -
Vivi231g00037 1276 FunFam Putative ABC transporter B family member 8 664 1008 - -
Vivi231g00037 1276 Pfam ABC transporter transmembrane region 699 966 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi231g00037 1276 Pfam ABC transporter transmembrane region 41 308 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi231g00037 1276 ProSitePatterns ABC transporters family signature. 506 520 IPR017871 GO:0005524|GO:0016887
Vivi231g00037 1276 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 367 603 IPR003439 GO:0005524
Vivi231g00037 1276 FunFam ABC transporter B family member 4 357 613 - -
Vivi231g00037 1276 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 704 985 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi231g00037 1276 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 42 332 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi231g00037 1276 SMART AAA_5 1047 1241 IPR003593 GO:0016887
Vivi231g00037 1276 SMART AAA_5 394 693 IPR003593 GO:0016887
Vivi231g00037 1276 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1014 1261 IPR027417 -
Vivi231g00037 1276 FunFam ABC transporter B family member 4 1010 1267 - -
Vivi231g00037 1276 Pfam ABC transporter 1039 1189 IPR003439 GO:0005524
Vivi231g00037 1276 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 360 605 IPR027417 -
Vivi231g00037 1276 CDD ABC_6TM_Pgp_ABCB1_D2_like 687 1003 - -
Vivi231g00037 1276 SUPERFAMILY ABC transporter transmembrane region 684 1004 IPR036640 GO:0005524|GO:0016020
Vivi231g00037 1276 Pfam ABC transporter 385 534 IPR003439 GO:0005524
Vivi231g00037 1276 Gene3D ABC transporter type 1, transmembrane domain 91 994 IPR036640 GO:0005524|GO:0016020
Vivi231g00037 1276 Gene3D - 365 618 IPR027417 -
Vivi231g00037 1276 CDD ABC_6TM_Pgp_ABCB1_D1_like 41 340 - -
Vivi231g00037 1276 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1020 1258 IPR003439 GO:0005524
Vivi231g00037 1276 SUPERFAMILY ABC transporter transmembrane region 35 348 IPR036640 GO:0005524|GO:0016020
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi231g00037 5 1262 Calmodulin-binding Proteins AT2G36910 43.570 0.0 1060
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi231g00037 K05658 - gmx:100807709 1981.07