Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi231g00036 ATGAACTATGCAGAATGTACACAGCAGGATCAAAGTGATTCTATGAAGATGAAAAGATCAAGCTCAGTGTCTAGTGATGAAGACAACTCTAAGTTGAAGATCAATAAAATTTCCGTTGAAGATTTAAAGCACAAGTGCAATATTTGTGGCAAAGCATATAACAACGGAAAAGCTTTGGGTGGTCACCGAAGATCTCACTTTCTTAAGAAGAAAGCTAATCATCATTCACAAAAGGTGAAAACTCCTCTCTCAATTCAAGTTAGTAACAATAGAGCTAATCGTTTCAATGATAATGATAAGTGTGATGAAGAAGAAATTGATGAGAAAAAGAAACTAAGTTGTTATATTTGCAAGAAGGAATTTTCGACAAACAATGCTTTGTATGGTCATATGAGATCTCACCCCGATAGGGTTGTTAAAGGAGTTAGTCCTCCTTCTTCCAACAATTCTAATTCGTCTATTCGACAAAACAAAGAAGATGAAGATGATCAAGGCGATGATAATTGTTCCTTGCCTAGATGGCAAAAGAGAGATAAGAGAGGCCGAAAATGTATTGGTAGTGCTGAGGCTGCTGACAATCTTTTGTATCTTCGATCCGATAAATATCAGTCTATTTCATGGACCGATCATAAAAGAGATTTTCACATATCTAGTGATGAGTCAAAAACTCGTAATTTCTCTGATCTTCTTCATAAAGAAGATATTCATATGTCTAGCAATGAGTCAAAAACTCCTGAATTATCCGTTGCTCATCATAAGGGAGAATTTCATAAGGGTGAGTCATCTTCAAATGAGATTCAGAAGAAAAAGCTTGGGATGAAAAAGATTAAAATCTTTATAGGATCTTCATCGAAGATTCGAAACAAAAATAATAAGAATGATGATGAGGGCGATGATGAGAAGATAAAGAGAGACAAAAGCCTGTCTCAGTCTCATGTTAAAGAGGAAGAAATGAACCATAATGATGAACAAAAGATATTGGATTTTGATTTGAATGAGCCTTATGTTATGGAGGATCAAGAAAATTGTTAA 1032 0.3469 MNYAECTQQDQSDSMKMKRSSSVSSDEDNSKLKINKISVEDLKHKCNICGKAYNNGKALGGHRRSHFLKKKANHHSQKVKTPLSIQVSNNRANRFNDNDKCDEEEIDEKKKLSCYICKKEFSTNNALYGHMRSHPDRVVKGVSPPSSNNSNSSIRQNKEDEDDQGDDNCSLPRWQKRDKRGRKCIGSAEAADNLLYLRSDKYQSISWTDHKRDFHISSDESKTRNFSDLLHKEDIHMSSNESKTPELSVAHHKGEFHKGESSSNEIQKKKLGMKKIKIFIGSSSKIRNKNNKNDDEGDDEKIKRDKSLSQSHVKEEEMNHNDEQKILDFDLNEPYVMEDQENC 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi231g00036 343 ProSitePatterns Zinc finger C2H2 type domain signature. 46 66 IPR013087 -
Vivi231g00036 343 SMART c2h2final6 112 134 IPR013087 -
Vivi231g00036 343 SMART c2h2final6 44 66 IPR013087 -
Vivi231g00036 343 MobiDBLite consensus disorder prediction 135 174 - -
Vivi231g00036 343 ProSitePatterns Zinc finger C2H2 type domain signature. 114 134 IPR013087 -
Vivi231g00036 343 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 19 339 IPR044653 GO:0003700
Vivi231g00036 343 Pfam C2H2-type zinc finger 114 136 - -
Vivi231g00036 343 Pfam C2H2-type zinc finger 44 66 - -
Vivi231g00036 343 MobiDBLite consensus disorder prediction 282 343 - -
Vivi231g00036 343 MobiDBLite consensus disorder prediction 1 19 - -
Vivi231g00036 343 Gene3D Classic Zinc Finger 41 134 - -
Vivi231g00036 343 ProSiteProfiles Zinc finger C2H2 type domain profile. 44 71 IPR013087 -
Vivi231g00036 343 MobiDBLite consensus disorder prediction 288 329 - -
Vivi231g00036 343 SUPERFAMILY beta-beta-alpha zinc fingers 44 134 IPR036236 -
Vivi231g00036 343 ProSiteProfiles Zinc finger C2H2 type domain profile. 112 134 IPR013087 -
Vivi231g00036 343 MobiDBLite consensus disorder prediction 155 174 - -
Vivi231g00036 343 MobiDBLite consensus disorder prediction 1 30 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi231g00036 43 148 C2H2 Transcription Factor Family AT2G26940 36.937 6.54e-14 69.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi231g00036 zf-C2H2_6 3.8e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi231g00036 - - vvo:131627027 621.313