Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi231g00029 ATGAGTGCAGGAACAACTGGATATAAACGGCTGAGAAAGCCAGAGGAGACAAGAATGAGAATCAGAAAACATGATTCAGATGAACCTTCTTATCCCATGACTGCATTGCTAGTAGATAGTGTGGATGCAAATAGACATTTGGAGCATCAAATACTTGAATCAATAGGCATTCAAACAGAACCTGCGAATAACGCTCATGAAGCAATGCAACTGTTGCTTAGTGGGGTGAATTTTGACGTCATATTTGTTGATTTTGATTTGCCCATGATAAGTGGACCCCAGTTCGTGATGGATATGCGTGTACTGGGGATTCAAAGCAAAATAATAGGGATGTTGTCAAACTTTAATGGTCATAATTCACAAATGTTTTTTGAAGCAGGAGTTAATGGCAATACTCAGAAACCTTTAACTCGAGAAACATTTGAACACATCTTTCAAATCATTCGCATCATGTGA 456 0.3838 MSAGTTGYKRLRKPEETRMRIRKHDSDEPSYPMTALLVDSVDANRHLEHQILESIGIQTEPANNAHEAMQLLLSGVNFDVIFVDFDLPMISGPQFVMDMRVLGIQSKIIGMLSNFNGHNSQMFFEAGVNGNTQKPLTRETFEHIFQIIRIM 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi231g00029 151 SMART REC_2 33 145 IPR001789 GO:0000160
Vivi231g00029 151 Pfam Response regulator receiver domain 36 142 IPR001789 GO:0000160
Vivi231g00029 151 PANTHER TWO-COMPONENT RESPONSE REGULATOR 25 147 - -
Vivi231g00029 151 ProSiteProfiles Response regulatory domain profile. 34 149 IPR001789 GO:0000160
Vivi231g00029 151 Gene3D - 11 149 - -
Vivi231g00029 151 SUPERFAMILY CheY-like 32 145 IPR011006 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi231g00029 36 138 Response Regulator Gene Family AT3G04280 33.333 2.04e-11 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vivi231g00029 Response_reg 1.8e-10 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi231g00029 - K20974 tpra:123904015 165.236