Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi231g00025 ATGGGAGGTGACGATCTTAAAAATGTCTCCATTGTTAAAAAGAAGAAAACCAAGAATGTTTCTTTTAGGTCAATTTTCATGCACGCTGATATTCTAGATTGGTTCTTCATGGTATTTGGTTCTTTGGGGGCAATCAGTGACGGCATAATGGTACCTTTGGTGGTGTTTATCACAAGCAAAATCATGAACTCTATGGGTGGTTTTTCTGCCTCAGCAAGCAACAACTTTGTTCATAGCATCAATGAGAATGCAGTTGCTGTGTTATATGTGGCTTGTGCCTCTTTTGTTGCTTGCTTCTTAGAGGGTTATTGTTGGACAAGAACAGGTGAAAGACAAGCCGCAAGAATGAGAGTTAGGTACATAAAAGCAATTTTAAGACAAGAAGTAGCATATTTCGATTTGCATGTTACAAGTACATCAGAAGTCATCACTAGCGTGTCTACAGACACACTAGTAATTCAAGATGTTCTAAGTGACAAGGTTCCAGATTTTTTGAAGAATATGTCTCGATTCATTGGGAGCTATATAGTGGCATTTATATCATTATGGAGATTGGCCATTGTTGGATTCCCTTTTGTAGTTCTACTTGTGGTTCCTGGTTTCATGTATAAGAGGACTTTGATGGGGTTGGCTAGAAAAATCAGACAAGAGTATAACCAAGCTGGTACAATAGTAGAACAAACAATATCTTCTATCAGAACTGTTTATTCTTTTGTAGGAGAAACCAAAACCATAGCTGCTTTCTCAGATGCCTTAAAAGGATCTGTGAAGTTGGGATTGAAACAAGGTTTAGCTAAAGGCTTAGTCATTGGAATCAATGGTGTTAATTATGCTGTATGGTCTTTAATTGCATATTATGGTAGCATATTGGTCATGTATCATGGTGCTAAAGGGGGTAATGTATTTGCAGTTGGATCATTATTTACAGTTGGTGGAACGGCTTTAGGATCTAGTTTAACAAATGTGAGATACTTCGCAGATGCAAGTGCTGCAGGAGAAAGAATAATGGAAGTAATAAAAAGAGTTCCAAAGATTGATTCAGAAAACATGGAAGGTGAAGTTTTAGAGAAAGTGTCAGGAGAAGTTGAATTCTGCCATGTTGAATTTGTGTATCCGTCAAGGCCAGAAAGTGTGATCTTAAATGATTTTTGCTTAAAGGTTCCATCAGGTAAAACAGTTGCATTAGTAGGAGGAAGTGGTTCGGGAAAATCAACTGTAATATCGCTTTTGCAAAGGTTTTATGATCCAATTGGTGGAGACATTCTTTTTGATGGAGTTCCTATTCATAAGTTGCAACTCAAATGGCTTAGATCTCAAATGGGATTGGTGAGTCAAGAACCTGCTTTATTTGCAACAAGTATTAAGGAGAATATACTTTTTGGAAGAGAGGATGCTACATATGAAGATGTTGTTGATGCTGCTAAAGCTTCAAATGCTCATAATTTCATTTCAAAGTTGCCACAAGGATATGATACTCAGGTTGGGGAGAGCGGAATACAAATGTCAGGAGGACAAAAGCAAAGGATTGCCATTGCAAGAGCCATAATAAAAATGCCAAGAATTCTATTGCTAGACGAAGCAACAAGTGCACTCGATTCTGAATCCGAGCGAGTAGTCCAAGAAGCTCTAGACAAAGTCGTGGTTGGACGCACCACCATCATCATCGCTCACCGCTTATCCACCATTCAAAATGCAGACATCATTGCATTCGTTCAAAATGGTAGAATCGTGGAAACGGGATCTCACGAGAGCCTCATTCAAAATAACAATTCGCTTTACACTTCCCTCGTTCATATCCAGCAAACCAAAAATGACCAAAACGAAGATACTCCATCTATCATTAATATAGATCACATGCAAAACACAAATAGTTATAGACACGCAGCACATTCTAGCTCTTTTGACTCAATGAAACGTGGTGGTGGGGATATTGTTAACGGTAAAAATGTTGTTGGAGATATCGTTAATAATGTTGAGGTATTTAATAATAATAATAAGAATAATAATATCTATAATGAGGAGGAGAGGGAGAAGAAGAAGGTAAAGGTTCCTTCATTTCGAAGGTTGTTGGCAATGAATTTTCCAGAGTGGAAGCAAGTGTGTTTGGGTTGTTTGAGTGCGATTTTCTTCGGTGCGGTTAATCCTTTGTATGCATTTTCAACAGGGTCAGTTGCATCAGTTTATTTTCTAGAGAACCGTGATGAGATCAAGAAACAAATTAGGATCTATGCATTTTGTTTTCTAGGGTTGGCTTTGTCGACAATGGTTTTAAATGTGCTTCAACACTATAGCTTTGCTTACATGGGAGAGTACTTGACTAAGAGGGTTAGAGAAAGAATGCTTTCCAAGATACTCACTTTTGAAGTTGGTTGGTTTGATGAGGATCAAAATTCTACAGGTGCTGTTTGCTCCAGACTTGCCAAAGAAGCCAATGTGGTAAGATCGTTGGTGGGGGATAGATTGTCACTAACGATACAAACTATATCAGCAGTGGCAGTAACATTCACAATGGGCCTAATCATTACTTGGAGACTATCCATTGTTATGATAGCAGTTCAGCCAATTAGCATAATTTGTTTCTACATAAAGTGTGTCCTTCTAAATAACATGTCAAGCAAAGCCATTAAGGCCCAAGATGAAAGTAGCAAAATAGCTGTTGAAGCTGTTTCAAATCTAAGAACCATCACATCTTTTTCATCACAAAATAGAATCCTTAAAATGCTTGAAAAATCCCAACAAGGCCCGAGTCATGAAAATATTAGACAATCATGGTTTGCAGGTATTGGGCTTGCATGTTCACAAAGCCTCATCTTTTGCACTAGAGCCTTAAACTTTTGGTATGGAGGAAAACTTGTGTCGCAAGGATATATAACAAAAAATGCATTTTTTGAGACTACTATGATTTGGATAAGCACTGGAAAAGTTATTGGTGATGCTGCTAGTAGCATGACTAATGATTTTGCTAAAGCTTCTAGTGCTGTTGGATCGGTTTTCGCAGTCCTTGATAGGTATACAAAAATTGAGCCAGATGATTTACAAGGTTACAAGGTTGAAAAACTAATCGGAAAAATTGAACTTCATGACGTTCATTTTGCATATCCAGCTAGGCCTAATTTGATGATCTTTCAAGGGTTCTCTATTAAAATTGACGCCGGAAAATCAACAGCTTTGGTCGGGGAAAGTGGTTCTGGAAAATCAACAATCATAGGACTAATTGAGAGATTTTATGATCCTTTTAAAGGGATGGTGACAATAGATGGTAGAGACATAAAGTCTTATAATCTAAGATCATTAAGGAAACACATTGCACTTGTGAATCAAGAACCAACATTGTTTGGGGGTACCATAAGGGACAATATAGCATATGGAGCATATGATGATAAAGTTGATGAAAGTGAGATCATTGAGGCTGCAAAGGCTGCAAAGGCTCATGATTTCATATCAAGCTTAAAAGATGGTTATGAGACATGGTGTGGTGATAAAGGAGTTCAACTTAGTGGTGGTCAAAAACAAAGAATTGCAATAGCTAGAGCTATATTGAAGAATCCAGAGGTGTTACTTTTGGATGAAGCAACTAGTGCACTTGATAGTCAATCAGAGAAACTAGTGCAAGATGCTTTAGAAAGGGTTATGGTTGGAAGGACAAGTGTGGTTGTGGCTCATAGGTTGAGTACTATACAAAACTGTGATCTGATTGCTGTTTTGGATAAGGGAATTGTTGTTGAAAAAGGAACACATTCATCTTTGTTGGCTAAGGGACCAAGTGGAGCTTATTACTCTTTGGTGAGTTTACAAAGAAGACCAACCAACACAATTGTCCATGCTTCACATGAAATCAACTAA 3843 0.3781 MGGDDLKNVSIVKKKKTKNVSFRSIFMHADILDWFFMVFGSLGAISDGIMVPLVVFITSKIMNSMGGFSASASNNFVHSINENAVAVLYVACASFVACFLEGYCWTRTGERQAARMRVRYIKAILRQEVAYFDLHVTSTSEVITSVSTDTLVIQDVLSDKVPDFLKNMSRFIGSYIVAFISLWRLAIVGFPFVVLLVVPGFMYKRTLMGLARKIRQEYNQAGTIVEQTISSIRTVYSFVGETKTIAAFSDALKGSVKLGLKQGLAKGLVIGINGVNYAVWSLIAYYGSILVMYHGAKGGNVFAVGSLFTVGGTALGSSLTNVRYFADASAAGERIMEVIKRVPKIDSENMEGEVLEKVSGEVEFCHVEFVYPSRPESVILNDFCLKVPSGKTVALVGGSGSGKSTVISLLQRFYDPIGGDILFDGVPIHKLQLKWLRSQMGLVSQEPALFATSIKENILFGREDATYEDVVDAAKASNAHNFISKLPQGYDTQVGESGIQMSGGQKQRIAIARAIIKMPRILLLDEATSALDSESERVVQEALDKVVVGRTTIIIAHRLSTIQNADIIAFVQNGRIVETGSHESLIQNNNSLYTSLVHIQQTKNDQNEDTPSIINIDHMQNTNSYRHAAHSSSFDSMKRGGGDIVNGKNVVGDIVNNVEVFNNNNKNNNIYNEEEREKKKVKVPSFRRLLAMNFPEWKQVCLGCLSAIFFGAVNPLYAFSTGSVASVYFLENRDEIKKQIRIYAFCFLGLALSTMVLNVLQHYSFAYMGEYLTKRVRERMLSKILTFEVGWFDEDQNSTGAVCSRLAKEANVVRSLVGDRLSLTIQTISAVAVTFTMGLIITWRLSIVMIAVQPISIICFYIKCVLLNNMSSKAIKAQDESSKIAVEAVSNLRTITSFSSQNRILKMLEKSQQGPSHENIRQSWFAGIGLACSQSLIFCTRALNFWYGGKLVSQGYITKNAFFETTMIWISTGKVIGDAASSMTNDFAKASSAVGSVFAVLDRYTKIEPDDLQGYKVEKLIGKIELHDVHFAYPARPNLMIFQGFSIKIDAGKSTALVGESGSGKSTIIGLIERFYDPFKGMVTIDGRDIKSYNLRSLRKHIALVNQEPTLFGGTIRDNIAYGAYDDKVDESEIIEAAKAAKAHDFISSLKDGYETWCGDKGVQLSGGQKQRIAIARAILKNPEVLLLDEATSALDSQSEKLVQDALERVMVGRTSVVVAHRLSTIQNCDLIAVLDKGIVVEKGTHSSLLAKGPSGAYYSLVSLQRRPTNTIVHASHEIN 1280
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vivi231g00025 1280 CDD ABC_6TM_Pgp_ABCB1_D2_like 690 1007 - -
Vivi231g00025 1280 SUPERFAMILY ABC transporter transmembrane region 33 346 IPR036640 GO:0005524|GO:0016020
Vivi231g00025 1280 CDD ABC_6TM_Pgp_ABCB1_D1_like 37 335 - -
Vivi231g00025 1280 FunFam Putative ABC transporter B family member 8 664 1012 - -
Vivi231g00025 1280 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1017 1265 IPR027417 -
Vivi231g00025 1280 Gene3D - 1014 1274 IPR027417 -
Vivi231g00025 1280 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 362 598 IPR003439 GO:0005524
Vivi231g00025 1280 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 38 327 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi231g00025 1280 Pfam ABC transporter transmembrane region 41 310 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi231g00025 1280 Pfam ABC transporter transmembrane region 700 962 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi231g00025 1280 SUPERFAMILY ABC transporter transmembrane region 687 1008 IPR036640 GO:0005524|GO:0016020
Vivi231g00025 1280 ProSitePatterns ABC transporters family signature. 1165 1179 IPR017871 GO:0005524|GO:0016887
Vivi231g00025 1280 Pfam ABC transporter 380 529 IPR003439 GO:0005524
Vivi231g00025 1280 FunFam ABC transporter B family member 4 1014 1271 - -
Vivi231g00025 1280 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 354 600 IPR027417 -
Vivi231g00025 1280 Gene3D - 352 601 IPR027417 -
Vivi231g00025 1280 Pfam ABC transporter 1043 1193 IPR003439 GO:0005524
Vivi231g00025 1280 FunFam ABC transporter B family member 1 24 361 - -
Vivi231g00025 1280 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 702 958 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi231g00025 1280 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1024 1262 IPR003439 GO:0005524
Vivi231g00025 1280 CDD ABC_MTABC3_MDL1_MDL2 362 600 - -
Vivi231g00025 1280 Gene3D ABC transporter type 1, transmembrane domain 25 621 IPR036640 GO:0005524|GO:0016020
Vivi231g00025 1280 SMART AAA_5 1051 1245 IPR003593 GO:0016887
Vivi231g00025 1280 SMART AAA_5 389 581 IPR003593 GO:0016887
Vivi231g00025 1280 ProSitePatterns ABC transporters family signature. 501 515 IPR017871 GO:0005524|GO:0016887
Vivi231g00025 1280 CDD ABC_MTABC3_MDL1_MDL2 1024 1265 - -
Vivi231g00025 1280 PANTHER ABC TRANSPORTER B FAMILY 12 599 IPR039421 -
Vivi231g00025 1280 FunFam ABC transporter B family member 4 352 608 - -
Vivi231g00025 1280 Gene3D ABC transporter type 1, transmembrane domain 668 1012 IPR036640 GO:0005524|GO:0016020
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi231g00025 674 1271 Calmodulin-binding Proteins AT2G36910 36.424 4.67e-111 377
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi231g00025 K05658 - gmx:100807709 1850.87