Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi231g00010 ATGGAGATTCACAAAAACACAAACAAGAAATGGGGAGGTTCCAAAAAGGAATCAAAATGGAAGAAGATGATTTTCTTCAACACTTCAAAAACCACCCAAAACCCACCTCAAGAATTTCTCTGCCCCATTTCTGGTTCTCTCATGTCCGACCCTGTAATTGTCTCCTCCGGCCATTCCTTCGACCGAACCTCAATCCAAGCCTGTAAAAATCTCAACTTTACCCCTCAACTCCAAGATGGCACCACCCCCAATTTCACAACCCTAATCCCAAATCTCAACCTCAAATCCTCAATTCTCAAATGGACCCAAACCCAAACCCAATCCCAATCCAAATTCCAAACCCAAACCAACCAAAATCTCACCACAACTGAAAACCTCGTACGTACGTTAATGTCCTCAAAAAAACATCAACAACCCCAAAACGACATCGTATCAGAGAAAAACGACCAAGAAAAAGAAACACTACAAATCCCAATCTTAACACCGCGAAAAACCTCGTACTCGAGCTCAGAGGAATCCATAGCTACTGCCACGTCATCATCATCAACAACACCAAAATTTCAAAGCTACTGTTACTCTTCACCTTCCTCTTCCGAAATTGAACCTTCAACAACACCAGAAGAAGAAGAATTCGTAACAAAACTCAGAAACCCTCAATCGATTATAGTAGAAGAAGCTCTAATCTCTCTCAGAAAAATCACAAAAACGAAAGAGGAATCTAGGGTTCAACTCTGCACCAATAGGATACTCTGTTCTTTGCGTTCTTTGATTTTGTCCAAAAACGACGTCGTAAGAGTCAACGCTCTTGCTTCATTAGTCAACCTTTCGCTCGAGAAAGTCAACAAAGTGAAGATCGTACGGTCGGGAATCGTTCCACCGTTGATTGAGGTTTTGAAATTTGGATCCTGTGAATCGCAGGAACATGCTTCGTGTGTGCTCTTTAGTTTAGCGCTTGATGATGATAATAAAACTGCGATTGGTGTTTTAGGTGCACTTTTGCCTTTGCTTCACGCGCTTAAATCGGAGAGTGAGAAGACGCGTCATGACTCGAGTTTGGCTCTTTGTCATTTGTCTTTAGTGAAGAGTAATAGGGTTAAGATGGTTAAACTCGGGTTTGTTTCGGTTCTTTGGGGAATGGTTAAATCGGGTTATATGATTGATCGGGTTTTGTTGATTTTGGGTAATTTGGGGTTTGGGCCGGATGGTCGGGCTGCGATGTTGGATGCGGGTGTTGTGGAGTGTTTGGTGGGTTTGTTGGCTGGAACTGAGTTGGATTCTGAGTCAACTCGAGAGAGATGTGTTGGGATTTTGTATATACTAAGTCATGGCGGGTTGAGGTTTAAGGCGGTGGCGAAAGAGATTAGGGTTGTGGAAATGTTGCAAAAGATGGAGAAAATGAAGAGTGAAAAAGCTAATGAGAAGGTGAAGAGGATATTGGAAATTATGAGTGAGAAGGAAATGGAGGAGGAAGAGGTGGATTGGGAGGAGTTGCTTGACTCGGGGTTCAGTGGTCGAACTATGAGTCGACTCAGTAATGGGTTGGACGAGTCAAATGTTAACTCGAATGAGTTTTGA 1575 0.4279 MEIHKNTNKKWGGSKKESKWKKMIFFNTSKTTQNPPQEFLCPISGSLMSDPVIVSSGHSFDRTSIQACKNLNFTPQLQDGTTPNFTTLIPNLNLKSSILKWTQTQTQSQSKFQTQTNQNLTTTENLVRTLMSSKKHQQPQNDIVSEKNDQEKETLQIPILTPRKTSYSSSEESIATATSSSSTTPKFQSYCYSSPSSSEIEPSTTPEEEEFVTKLRNPQSIIVEEALISLRKITKTKEESRVQLCTNRILCSLRSLILSKNDVVRVNALASLVNLSLEKVNKVKIVRSGIVPPLIEVLKFGSCESQEHASCVLFSLALDDDNKTAIGVLGALLPLLHALKSESEKTRHDSSLALCHLSLVKSNRVKMVKLGFVSVLWGMVKSGYMIDRVLLILGNLGFGPDGRAAMLDAGVVECLVGLLAGTELDSESTRERCVGILYILSHGGLRFKAVAKEIRVVEMLQKMEKMKSEKANEKVKRILEIMSEKEMEEEEVDWEELLDSGFSGRTMSRLSNGLDESNVNSNEF 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi231g00010 524 MobiDBLite consensus disorder prediction 131 185 - -
Vivi231g00010 524 SMART Ubox_2 38 101 IPR003613 GO:0004842|GO:0016567
Vivi231g00010 524 ProSiteProfiles U-box domain profile. 34 108 IPR003613 GO:0004842|GO:0016567
Vivi231g00010 524 SMART arm_5 399 442 IPR000225 GO:0005515
Vivi231g00010 524 SMART arm_5 237 277 IPR000225 GO:0005515
Vivi231g00010 524 SMART arm_5 319 359 IPR000225 GO:0005515
Vivi231g00010 524 SMART arm_5 278 318 IPR000225 GO:0005515
Vivi231g00010 524 Gene3D - 205 481 IPR011989 -
Vivi231g00010 524 PANTHER U BOX DOMAIN-CONTAINING 25 483 - -
Vivi231g00010 524 MobiDBLite consensus disorder prediction 503 524 - -
Vivi231g00010 524 Pfam U-box domain 36 105 IPR003613 GO:0004842|GO:0016567
Vivi231g00010 524 MobiDBLite consensus disorder prediction 504 524 - -
Vivi231g00010 524 SUPERFAMILY RING/U-box 28 104 - -
Vivi231g00010 524 Pfam Armadillo/beta-catenin-like repeat 281 317 IPR000225 GO:0005515
Vivi231g00010 524 Coils Coil 456 476 - -
Vivi231g00010 524 SUPERFAMILY ARM repeat 211 483 IPR016024 -
Vivi231g00010 524 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 15 122 IPR013083 -
Vivi231g00010 524 MobiDBLite consensus disorder prediction 159 185 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi231g00010 1 524 U-box Gene Family AT5G40140 48.566 2.48e-151 442
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi231g00010 - - lja:Lj2g3v1020040.1 565.074