Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi228g00046 ATGGCAGACCCTTCAACCATTTACGAGTTTCTGAAGCAGCAGCAACAACAACAACAACAACCACCAACCTCATCATCTTCAGCTTCACGACCTAGAAAATCAGCAGCACCACCAACAACGAGAACTTTCCAATGCAACTTCTGTTACCGCAAGTTTTATACCTCTCAAGCTCTTGGTGGTCACCAAAACGCTCACAAACTTGAACGAGCTGCTGCAAGATCAAGAACCATCAACCTCAACAACAATGATGTTGTCTCTCTCTCATCATCACCTCAACCACCACAACAACAACCACCACCACTACCGACTCATTTTTCACTCATCAATGGCTCCAACATCTCCAACTCCAAACCCTTGACTGTGTCTGAACAACTTGAACATGGTCATTTCTTTCATCATCCTCATCCTCATCATCACTCTTATTGGCAACAGTTCGAAATGGAGTCGTTACAGTTTCAAACACATCATCCTCATCCTCATCATCACCATGTTGCAACAACAACAACAACAAACACTCTTCCTATGGTTCATTTCAATCCTTCTGCTGCTTCAACTTCAACTCATGCTCACCATGTTTTCTCCAACAATGCGGCTTCTGCTTCTCCACCTCAACTTGTTGATGCGTCTGACCATGTCAATCTTGACCTCACACTTCACTTGTGA 663 0.4389 MADPSTIYEFLKQQQQQQQQPPTSSSSASRPRKSAAPPTTRTFQCNFCYRKFYTSQALGGHQNAHKLERAAARSRTINLNNNDVVSLSSSPQPPQQQPPPLPTHFSLINGSNISNSKPLTVSEQLEHGHFFHHPHPHHHSYWQQFEMESLQFQTHHPHPHHHHVATTTTTNTLPMVHFNPSAASTSTHAHHVFSNNAASASPPQLVDASDHVNLDLTLHL 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi228g00046 220 PANTHER ZINC FINGER PROTEIN JAGGED 12 220 IPR045320 GO:0003700
Vivi228g00046 220 ProSiteProfiles Zinc finger C2H2 type domain profile. 43 70 IPR013087 -
Vivi228g00046 220 Gene3D Classic Zinc Finger 28 92 - -
Vivi228g00046 220 MobiDBLite consensus disorder prediction 8 40 - -
Vivi228g00046 220 ProSitePatterns Zinc finger C2H2 type domain signature. 45 65 IPR013087 -
Vivi228g00046 220 MobiDBLite consensus disorder prediction 1 40 - -
Vivi228g00046 220 SUPERFAMILY beta-beta-alpha zinc fingers 40 70 IPR036236 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi228g00046 41 107 C2H2 Transcription Factor Family AT5G57520 51.471 4.60e-14 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi228g00046 - - vvo:131614564 341.658