Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi228g00031 ATGGATGATCAAACTGAGTCATGTTCTTCTAATACATTGGTACAGTGTCGAATATGTCACGATGAAGATTTAGAGTTAAACATGGATACGCCTTGTTCTTGTTCTGGCACATTGCAGTATGCACATAGAATATGTGTGCAAAGATGGTGCAATGAGAAAGGTGATACTACTTGTGAGATTTGCCAACAGCAATTTAAAGGCTATACTCCTCCTCCACAAGCTCCTTTATTCCGCTATAGAGGCAACTGGGAAATTCCAAGAATTGGTTTTAATAATCATCAGCTCATAGCATTGTTTCCTGCTAATCATGAATTTCTAGACTTTGACTTTGAATATTCAGCTTCCTCTAGAAGGAGTCGTCTATTCATTCGCATCGTTGCCATCATTTTTATTGTTCTGCTTGTTTTACGTCATACACTTTCAATCGTATTTATACTCGATGAATTTGAAGAGACTTCCTTGACAGTGATTACGTTGCTTATGTGGGGAGTCACTGGAATAATTGTACCAGTGTATATAATGGTAAAAGCTATTCAACAACTTCAAAATCAGAATCAGAACCCCCTTATGCAACTGCGATCACTTGATGAAAACAACATGAGACAGTCCCAGTTGCGGGTCATCCATATTCAGTGA 636 0.3821 MDDQTESCSSNTLVQCRICHDEDLELNMDTPCSCSGTLQYAHRICVQRWCNEKGDTTCEICQQQFKGYTPPPQAPLFRYRGNWEIPRIGFNNHQLIALFPANHEFLDFDFEYSASSRRSRLFIRIVAIIFIVLLVLRHTLSIVFILDEFEETSLTVITLLMWGVTGIIVPVYIMVKAIQQLQNQNQNPLMQLRSLDENNMRQSQLRVIHIQ 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi228g00031 211 CDD RING_CH-C4HC3_MARCH 16 62 - -
Vivi228g00031 211 SUPERFAMILY RING/U-box 12 66 - -
Vivi228g00031 211 ProSiteProfiles Zinc finger RING-CH-type profile. 8 68 IPR011016 GO:0008270
Vivi228g00031 211 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 6 186 IPR033275 -
Vivi228g00031 211 SMART ringv_2 15 62 IPR011016 GO:0008270
Vivi228g00031 211 Pfam Protein of unknown function (DUF3675) 67 178 IPR022143 -
Vivi228g00031 211 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 67 IPR013083 -
Vivi228g00031 211 Pfam RING-variant domain 16 61 IPR011016 GO:0008270
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi228g00031 16 62 C3H Transcription Factor Family AT2G37950 46.000 3.20e-07 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi228g00031 - - gmx:100784696 236.884