Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi228g00025 ATGGCTCCCAAATCCCAAACCCTAGACTTAAACTCCACCCAGTTATTCACCACCGCTCTTCAATCCCTCAATCTCCCTAAACCCTCCCTCCCACTCCCTCCACTCCCATCATCATCTTCCTCCATTCCCCACTCCAAACTCATCCCTAACACCCGCTTCCTCATCGACGCATTCCGCCACTCCGGCGACTTCTCCGTCTCCTACTTCCTCTCTCACTTCCACTCCGATCATTACACCGGCCTCACCTCCTCCTGGTCCCGCGGCATCATCTTCTGTTCCGCCACCACCGCCACACTCCTCATCCGCATCCTTAACATCCCTCCCTCTTTCATCTACCCTCTCCCTCTTCACCAACCTGTCCTAATCGATGGCTCTTCTATCACCCTCGTCGACGCCAATCACTGTCCCGGTGCCGTCCAGTTCCTCTTCCATGTTCCATTGTCCGAACAACAACAATCCATGAGGTATGTTCATACTGGCGATTTTCGGTTTACTCCTGAAATGAAATTGGATCCTGCACTTGGTTCATTTATTGGTGCTGATGCTGTGTTTTTGGATACAACTTATTGTCACCCTAAGTTTGTTTTCCCTTCGCAAGACGAGTCTATTAATTATGTTGTTGATGCTGTAAACCAGTGTGATGGTGATGATGTGTTGATTCTTGTTGCCACTTATGTTATTGGTAAGGAGAAGATTTTGCTTGAGCTTGCTAGGAAGTTTGGGAAGAAGGTACATGTGGATGCTAGGAAAATGGAGGTTTTGAGGGCTCTTGGGTATGGGGAGAGTGGTGAGTTCACGGAGGATGTTTTAGAGACTAATATTCATGTTGTTGGGTGGAATGTGTTGGGGGAGACTTGGCCTTATTTTAGGCCTAATTTTGTTAGGATGAAGGAGATTATGATTGAGAGAGGGTACTCTAAGGTTGTTGGTTTTGTGCCTACTGGATGGACTTATGAAGTGAAGCGTGATAAGTTTGCGGTTAGGTCCAAGGATTCTTGTCAGATTCATCTTGTGCCGTATAGTGAGCATTCGAACTATGATGAGCTCAGGGAATATGTGAGGTTTTTGAAACCAAAGAGGATTGTTCCGACTGTGGGTTTAGATGTTGAGAAGAGTGATAGTAAACATGTTGACAAAATGAGGAAGTATTTTGCTGGTTTGGTTGATGAGACGGCCAATAAGCAAGAGTTTTTAAAGGGGTTTAAGCGGTGTGATTCTGGTGTAGTGGGTTTTGAGACTGGGAAGGATGTAACTGGTGATTTGGAACCAGGGTCGAGCATCGAGAAAGAGGTCAAGCCATCTGATGTGGGGAAGGATAGTAGTAATCCAAATGTTATTGTGAGTCTGCCATCTTGTATGGGAGAAACTTGCATGGAAGATCCTACATTGCTAAATGAAGAAGAAAAAGAGAAGGTCATTCAAGAACTGAGTAGTTGTTTGCCCACGTGGGTCACCCGAAGCCAGGTGTTAGATTTGATCAGCATCTTTGGGAGCAATGTCGTTGAAGCAGTTTCTAATTTCTTTGAACGTGAAACTGAATTTCATGAGCAAGTAAATTCTGGTCAAACTTCAGTTTCAACACCCAGGTGTTGCCCATCGAATGACTCCAGTCCTATTTCAAAATCAAACCTCAACAATACAAACAGCCCTTTAAAAAATTTGGACATTTTTCCAAGTCAAGACTCTAAATTGACCAACTCCAAATTGACTAAACTAAGGCACACACTACCAAATCAGATTTCCCCTTCCAAAAGAAAGAGGAGTAGTGAAAGTAAGCCAAACAAGAAAGTAAAAGTCAAAGCAAAATCAGAATTGAGTGGTTCAAAGCAGGCAACAATAACAAAATTCTTCAGCAAAGCAATGCCTGAGATTCCCGGTGATACCCAATCTGATCAATGTGGAAAGAATCCGGGGGAAAGCCCCAAAGTTGAAGAATTGTTGCCAACTGCAGCTGGAAACTTGTACAAGCATGAGATTGATCAGTTTATACAAATAATAAATGGGGACGAGTCATTAAAAAAGCAAGCGGCTACTATAATTGAAAAGGCAAAAGGAGATATTAATAAAGCATTGGATATATATTACTGTAATTCTGGCAATCTTGGTGAAAGTGAAATATCAGTTCAAGGGGAGTTCAATATCGACAGACCTTTAGAGAAGAAGAACGTGTCACAAGAATTGAGAGTTATACCTGATATATCTATGCATAGAGTGTTAAAAAATAATGTAGATGTAACTCATGTATCTTTACCATCTGAGAAATACAACCCCAAAGAACATGCGTGTTGGAGTGATGGACAGTCTGCACCATATTTACATCTTGCACGAACCTTCAACCTGCTTGAGGATGAAAAAGGAAAGATAAAAGCTACTTCAATGCTATGCAACATGTTCAGAAGTTTGTTGGCCTTGTCTCCAGAAGATGTGCTTCCTGCTGTGTATCTATGTACAAACAAAATTGCTGCAGACCATGAAAACGTGGAACTAAATATTGGTGGAAGTTTAGTCACTACAGCACTTGAAGAGGCGTGCGGGACAAATCGATTGAAAATTAGGGAGATGTATAACAAACTTGGCGACCTTGGTGATGTTGCTCAAGAGTGTCGTCAAACACAGAGATTGCTGGCACCGCCTACACCACTTCTGATTAAGGATATTTACTCTGCTCTACGAAAGATAAGTGTGCAAGCAGGCAATGGAAGCACATTACGAAAGAAAGGCATCATTGTTCATCTCATGCGTTGCTGCCGTGAAAAGGAGATGAAGTTTCTTGTCCGGACCTTGGTCAGGAACTTGAGGATTGGAGCAATGCTTAGAACTGTTTTGCCTGCATTGGCTCATGCTGTTGTTTTGAATTCTCGCCATACTGTGTGCCAAGAAGGAACGGCAGAAAATTTGAAAGCGGCGCTTCAGGTCCTTTCTGTGGCAGTTGTTGAAGCATATAACATACTGCCAAATTTGGATATCATAGTCCCATCTCTCATGAACAAAGGCATTGAGTTTTCAGTTTCAAGTTTATCAATGGTTCCAGGAATCCCAATTAAGCCTATGCTTGCAAAGATCACCAATGGCATTCCCCAAGCATTGAAGCTATTTCAAAATAAAGCCTTTACATGTGAATATAAGTATGATGGTCAGCGAGCTCAAATTCACAGATTAGTCGATGGATCAGTTCATGTTTTTTCAAGAAATGGAGATGAATCAACTTCAAGATTCCCTGATCTGATTGATACGATAAGGGAATCTTGCAAGCCTGTTGCATCAACTTTCATAATTGATGCAGAGGTTGTTGGTATTGATAGAAAAAATGGATATAGAATTATGTCTTTCCAGGAGCTATCTTCACGTGAGAGAGGAGGCAAAGATACTTTAGTTACTAAAGAGAGCATAAAGGTGGGCATTTGCATCTTTGTCTTCGATATCATGTTTGCAAATGGAGAACAGTTACTGGGCTTTCCACTCCGCCGAAGACGAAAGTATCTGAAGGATTTGTTCTATGATGAACGACCTGGGTATTTTGAATATGCAAAAGAAACAACTATCGAAGCAGATGATGCTTGCTTAACATGTGAAGCCACATTAACTAGAATAAATGCTTTCCTTGAAGATGCCCTCCGCTCTTCATGTGAAGGAATTATGGTGAAAACATTGGATATTGATGCTGGGTATTCTCCATCGAAGCGATCTGACAAATGGTTAAAGGTCAAGCGAGATTATGTAGAAGGATTAAATGATACTCTTGATTTAGTACCAATTGGTGCTTGGCATGGAAATGGAAGGAAAGCTGGATGGTATAGTCCATTTCTCATGGCATGTTTCAATCCTGAAACTGAGGAGTATCAAAGTGTATGCCGAGTGATGTCTGGGTTCTCAGACTCTTTTTACATAGAGATGAAAGAAATCTTTTCTGGGGACAAAGTCTTGTCAAAAAAGCCACCATATTATCAAACAGGAGAGACACCAGACATGTGGTTTTGTCCACAGCTTGTTTGGGAAATAAGAGGTGCAGACTTCACAGTATCCCCAGTTCATCATGCTGCTATTGGCTTAGTTCATCCATCTCGAGGCATCTCAATCAGATTTCCAAGATTTATTTGCAGCGTGTCAGACAGAAATCCAGAAGAATGTAGCACAGCTGCCGATATAGTTGAAATGTTTCATTCGCAGACTCGGAAGATGGATGTCACAACCGAAGGCTGA 4200 0.4202 MAPKSQTLDLNSTQLFTTALQSLNLPKPSLPLPPLPSSSSSIPHSKLIPNTRFLIDAFRHSGDFSVSYFLSHFHSDHYTGLTSSWSRGIIFCSATTATLLIRILNIPPSFIYPLPLHQPVLIDGSSITLVDANHCPGAVQFLFHVPLSEQQQSMRYVHTGDFRFTPEMKLDPALGSFIGADAVFLDTTYCHPKFVFPSQDESINYVVDAVNQCDGDDVLILVATYVIGKEKILLELARKFGKKVHVDARKMEVLRALGYGESGEFTEDVLETNIHVVGWNVLGETWPYFRPNFVRMKEIMIERGYSKVVGFVPTGWTYEVKRDKFAVRSKDSCQIHLVPYSEHSNYDELREYVRFLKPKRIVPTVGLDVEKSDSKHVDKMRKYFAGLVDETANKQEFLKGFKRCDSGVVGFETGKDVTGDLEPGSSIEKEVKPSDVGKDSSNPNVIVSLPSCMGETCMEDPTLLNEEEKEKVIQELSSCLPTWVTRSQVLDLISIFGSNVVEAVSNFFERETEFHEQVNSGQTSVSTPRCCPSNDSSPISKSNLNNTNSPLKNLDIFPSQDSKLTNSKLTKLRHTLPNQISPSKRKRSSESKPNKKVKVKAKSELSGSKQATITKFFSKAMPEIPGDTQSDQCGKNPGESPKVEELLPTAAGNLYKHEIDQFIQIINGDESLKKQAATIIEKAKGDINKALDIYYCNSGNLGESEISVQGEFNIDRPLEKKNVSQELRVIPDISMHRVLKNNVDVTHVSLPSEKYNPKEHACWSDGQSAPYLHLARTFNLLEDEKGKIKATSMLCNMFRSLLALSPEDVLPAVYLCTNKIAADHENVELNIGGSLVTTALEEACGTNRLKIREMYNKLGDLGDVAQECRQTQRLLAPPTPLLIKDIYSALRKISVQAGNGSTLRKKGIIVHLMRCCREKEMKFLVRTLVRNLRIGAMLRTVLPALAHAVVLNSRHTVCQEGTAENLKAALQVLSVAVVEAYNILPNLDIIVPSLMNKGIEFSVSSLSMVPGIPIKPMLAKITNGIPQALKLFQNKAFTCEYKYDGQRAQIHRLVDGSVHVFSRNGDESTSRFPDLIDTIRESCKPVASTFIIDAEVVGIDRKNGYRIMSFQELSSRERGGKDTLVTKESIKVGICIFVFDIMFANGEQLLGFPLRRRRKYLKDLFYDERPGYFEYAKETTIEADDACLTCEATLTRINAFLEDALRSSCEGIMVKTLDIDAGYSPSKRSDKWLKVKRDYVEGLNDTLDLVPIGAWHGNGRKAGWYSPFLMACFNPETEEYQSVCRVMSGFSDSFYIEMKEIFSGDKVLSKKPPYYQTGETPDMWFCPQLVWEIRGADFTVSPVHHAAIGLVHPSRGISIRFPRFICSVSDRNPEECSTAADIVEMFHSQTRKMDVTTEG 1399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi228g00025 1399 FunFam DNA ligase 195 343 - -
Vivi228g00025 1399 Gene3D - 1241 1398 IPR012340 -
Vivi228g00025 1399 MobiDBLite consensus disorder prediction 516 606 - -
Vivi228g00025 1399 Gene3D - 1027 1240 - -
Vivi228g00025 1399 Pfam ATP dependent DNA ligase C terminal region 1262 1366 IPR012309 GO:0003910|GO:0006281|GO:0006310
Vivi228g00025 1399 SUPERFAMILY Metallo-hydrolase/oxidoreductase 49 366 IPR036866 -
Vivi228g00025 1399 CDD SNM1A-1C-like_MBL-fold 46 192 - -
Vivi228g00025 1399 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 276 1391 - -
Vivi228g00025 1399 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 1040 1048 IPR016059 GO:0003909
Vivi228g00025 1399 CDD OBF_DNA_ligase_I 1245 1388 - -
Vivi228g00025 1399 FunFam DNA ligase 1241 1398 - -
Vivi228g00025 1399 Gene3D - 747 1018 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Vivi228g00025 1399 Pfam DNA ligase N terminus 770 946 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Vivi228g00025 1399 Gene3D - 195 343 - -
Vivi228g00025 1399 CDD Adenylation_DNA_ligase_I_Euk 1007 1239 - -
Vivi228g00025 1399 Gene3D DNA ligase/mRNA capping enzyme 1045 1176 - -
Vivi228g00025 1399 ProSiteProfiles ATP-dependent DNA ligase family profile. 1127 1274 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Vivi228g00025 1399 MobiDBLite consensus disorder prediction 517 584 - -
Vivi228g00025 1399 SUPERFAMILY Nucleic acid-binding proteins 1245 1389 IPR012340 -
Vivi228g00025 1399 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 972 1238 - -
Vivi228g00025 1399 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 749 999 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Vivi228g00025 1399 Pfam DNA repair metallo-beta-lactamase 263 366 IPR011084 -
Vivi228g00025 1399 FunFam DNA ligase 1045 1176 - -
Vivi228g00025 1399 Pfam ATP dependent DNA ligase domain 1016 1236 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Vivi228g00025 1399 Gene3D - 48 365 IPR036866 -
Vivi228g00025 1399 NCBIfam ATP-dependent DNA ligase 828 1386 IPR000977 GO:0003910|GO:0005524|GO:0071897
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi228g00025 755 1389 Core DNA Replication Machinery Family AT1G08130 39.874 3.17e-167 519
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi228g00025 - - gmx:100807673 2155.95