Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi228g00020 ATGCCGAAATCCAGTACCGACGCCAAATCCACCGATAATCGGTTGAATTATAAGGTCAAGGTCGCTGCAACGGGTAGAAAGAAGTCCAAGAAAACTACTATTGATCCGCTTAAGCCGAGGCGGCCTCCGAGTGCTTTCTTAGTTTTCATGTCTGAGTTTAGAGTGAAGTTCTCAAATTCAAACAGAGGCAATGGCGTATCTGTGGTTAGTAAAGCTGGTTCCGAGGAATGGAAAGCGATGTCGTTTGCTGAGAAGGCTCCTTACTTTGCTAAGGTGGGAAAGATGAAAGAGGAGTATGAGAAGATTAAGCGTGCCTATAATGCTAATGCAGAAAAAAAGAAGGAAGAGGATTATGAGGAGATTATACGAGCTTATAATGTTAGATTGCCTGGTGACTATGGTACTGTTTTTACTCCTGCATCAACGACCAAGAAGATTAAACTAATGGCCGATACTCCCACCCAAAGTCGGTCCCTTAAGATGTTAGAAATGCCTTCCTTCCCCTCAACTTCCTCTGCTCACGAGTCTTCATCTTCTGTTGATATCCGGGGGGTTCAGTCAAAGCCTTCCGGCTCACATGCAACTCCGACTCAATCTCTTGACTCGTGCCAGCCCATCGCCACGATTTTACCTAAAAACTATGCCAGTGGTGATGACAACTATGCCAGTGGTGATGACAACTATGCCAGTGAGGATGAAGACGTCCAAACAGTTATTAGTGAGAAAGTTCCGTCAGGTTTCGACATGGTGAGGGCAGACCCACAACTAAACATTATTCAATCTGCAGATGTAGTCATGAAGGAAGATACAGTCATTTCCGAAGAAACAACCACCTTGAAACGGGTTTTCCACGAAGTCGACCCTCATCAAGATCCAACGGATGACCTACTTCACCAGCCTGAGAAAGATTGTAACAGCGACACTGACGATACTGACCCCGCAAGTGACTTGCTTTCTTTACTGACTGACCCAAGTCATAAGTTATCTGGTATGTCCTCCCCTGTTGCTGAGTATGATTCTAGTGCCTCCAAAGCCATGGAACTTTTCAAAGAACTGAAGGGATTGATGTCAAAGCCTCTGGATGTTGCTTCTGCTGACATCTCTGCATGCCACCAGATGAGGAGGCTAGTTGAAGAACTCAATCCTCTTAAGCAACTACTACCTCTCTCAAGCCAAATTACTCTGGAGCAGATCAACAACTTTCTTTCCGTTCACGCCTCCAAGAAGGCTCTCTTAAGATTTATCCTTCCTGTTTACGAGCAAGCGGTGAAGACCAAAGAAGACTTGGTGAAGAAGCTCCTTTCTCTCAAAGAAGAAAAAGACAAGATTGCAGCTGATAGAAAGCAGCAAGAAGCAGTTAAGGTCAAGGCTGAAGAGAAAGTTGAGATACTCAAGAAGCAATTAGCCTTGGCTGAGGCGGAACTAGCTGAAGCTTACACTGGTATCGGTGACTCCATCGAGTTGGAGAAGAAGCGTGTTCACAACATCAATGCCCTTCGCACTGAAGTGAATCAGACAGCAGCAACTCTAAAGAATCTTCGGTCCGACTACGAGTCAGCAATATCAACTAAGAAAGACCTTGAGGACTTGCTGTCAGAGATTACCCAATCTAGTTCTTGA 1620 0.4506 MPKSSTDAKSTDNRLNYKVKVAATGRKKSKKTTIDPLKPRRPPSAFLVFMSEFRVKFSNSNRGNGVSVVSKAGSEEWKAMSFAEKAPYFAKVGKMKEEYEKIKRAYNANAEKKKEEDYEEIIRAYNVRLPGDYGTVFTPASTTKKIKLMADTPTQSRSLKMLEMPSFPSTSSAHESSSSVDIRGVQSKPSGSHATPTQSLDSCQPIATILPKNYASGDDNYASGDDNYASEDEDVQTVISEKVPSGFDMVRADPQLNIIQSADVVMKEDTVISEETTTLKRVFHEVDPHQDPTDDLLHQPEKDCNSDTDDTDPASDLLSLLTDPSHKLSGMSSPVAEYDSSASKAMELFKELKGLMSKPLDVASADISACHQMRRLVEELNPLKQLLPLSSQITLEQINNFLSVHASKKALLRFILPVYEQAVKTKEDLVKKLLSLKEEKDKIAADRKQQEAVKVKAEEKVEILKKQLALAEAELAEAYTGIGDSIELEKKRVHNINALRTEVNQTAATLKNLRSDYESAISTKKDLEDLLSEITQSSS 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi228g00020 539 SUPERFAMILY HMG-box 26 126 IPR036910 -
Vivi228g00020 539 Coils Coil 95 116 - -
Vivi228g00020 539 SMART hmgende2 38 108 IPR009071 -
Vivi228g00020 539 MobiDBLite consensus disorder prediction 214 233 - -
Vivi228g00020 539 MobiDBLite consensus disorder prediction 285 323 - -
Vivi228g00020 539 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 39 107 IPR009071 -
Vivi228g00020 539 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 5 117 IPR031061 -
Vivi228g00020 539 Coils Coil 419 474 - -
Vivi228g00020 539 Coils Coil 496 530 - -
Vivi228g00020 539 MobiDBLite consensus disorder prediction 285 309 - -
Vivi228g00020 539 MobiDBLite consensus disorder prediction 165 204 - -
Vivi228g00020 539 CDD HMG-box_AtHMGB1-like 41 99 - -
Vivi228g00020 539 Pfam HMG (high mobility group) box 39 107 IPR009071 -
Vivi228g00020 539 Gene3D High mobility group box domain 22 122 IPR036910 -
Vivi228g00020 539 MobiDBLite consensus disorder prediction 1 40 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Vivi228g00020 HMG_box 3.6e-14 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi228g00020 K25507 - vvo:131612241 974.541