Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi225g00009 ATGGCTGGGCAATCGAACCATGAACTCTCACTCTTTTCAGCAGAGGAGCTTGAATTCATTGCTGAGGATGAGATCATCGACATCGTTCCTAATCTCAAAATGGATCCTCTCTGCCTAGTTTCTGGAGATTTTGGTCCGTTTATACCACAGATTGTCACTCAAGTTCCGCTTTGGTTGGCTATTGCTCTCAGGAGGAGAGGCAAGTGCTCCATTGTCCCTCCCCAATGGATGTCTGTTGAGAAGTTGACACAAGTGTTGGAAGAAGAACGAGACTCTCAAGAGATGTCAGAGCATTTGCCATTTCATTATGTAGAAATTTCAAGACTTCTTTTTGACCATGCACGTGACAACATTCCTGATGCATACATGGTGAGGTCTTTAATTGAGGACATCAGAGATGTAAGGTTTCATAAAGTTGAGACTGACTTGGAAGGATTCAATGGTTTTACAATAGCTGTGAAGATCAAAAATTTATCTGCAATGGAAGTGAATATTGTTCGTCCATTTATTGGAAGAGCTTTACAAGCATTTTACAAGCATGATACTCCTGAGTTAATCCCAGACCCAGAGCGAGTTTCTGAAAGACGGCAGCAAGTTGCCCAGAATGCCCCTAGAAGGCAACTTCGAAGATAG 633 0.425 MAGQSNHELSLFSAEELEFIAEDEIIDIVPNLKMDPLCLVSGDFGPFIPQIVTQVPLWLAIALRRRGKCSIVPPQWMSVEKLTQVLEEERDSQEMSEHLPFHYVEISRLLFDHARDNIPDAYMVRSLIEDIRDVRFHKVETDLEGFNGFTIAVKIKNLSAMEVNIVRPFIGRALQAFYKHDTPELIPDPERVSERRQQVAQNAPRRQLRR 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi225g00009 210 PANTHER DNA REPLICATION COMPLEX GINS PROTEIN PSF2 7 204 IPR007257 GO:0005634|GO:0006260
Vivi225g00009 210 PIRSF GINS_PSF2 2 210 IPR007257 GO:0005634|GO:0006260
Vivi225g00009 210 SUPERFAMILY GINS helical bundle-like 73 181 IPR036224 -
Vivi225g00009 210 Gene3D - 78 186 - -
Vivi225g00009 210 CDD GINS_B_Psf2 13 74 - -
Vivi225g00009 210 Pfam GINS complex protein 53 162 IPR021151 -
Vivi225g00009 210 FunFam DNA replication complex GINS protein PSF2 12 77 - -
Vivi225g00009 210 FunFam DNA replication complex GINS protein PSF2 78 194 - -
Vivi225g00009 210 Gene3D - 12 77 - -
Vivi225g00009 210 SUPERFAMILY PriA/YqbF domain 12 72 - -
Vivi225g00009 210 CDD GINS_A_psf2 66 181 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi225g00009 1 146 Core DNA Replication Machinery Family AT3G12530 67.123 3.70e-72 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi225g00009 K10733 - gmx:100780528 367.081