Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi225g00001 ATGGGAGAGAGTTCTATGAACCTTGTAGAAAGTGCAACAAGAAACAACAAAATGGAAGAAGTTGAAAGAGAAGAAGAACAAGAACAAGAAATGGATCCAGAAAGTAATAATCCACTACATCAGACACTGATCAAGAGAAACAGAACATTATCTTCAAATCCACTTGCTCTTGTTGGTGAAAAAGTTTCCTACATAGAAAGCTTAGACTATGAGATTAATGAGAATGATTTATTCAAACATGGATGGAGAAGTAGATCAAGAGTTGAAGCATTACAATACATATTCTTGAAATGGTTACTTGCATCTCTTGTTGGATTTCTCACTGGTATTATAGCTACACTTATAAATCTTGCTGTTGAGAACATTGCTGGATACAAGTTTTTGGCTGTTCTTCAATACATCAATGGAGAAAGGTACTTGACAGGTTTCCTATATTTTGCGGGAGTTAATTTCGTCTTAACATTTGTTGCTGCTATTCTGTGTGTGTGTTTTGCACCAACTGCAGCTGGACCTGGAATACCTGAAATCAAAGCTTATCTTAATGGTGTGGATACACCAAACATGTTTGGTGCTACAACATTAATAGTTAAGATAATTGGAAGCATTGGAGCTGTCTCAGCAGGCCTAGATCTTGGGAAAGAAGGACCCTTGGTACATATAGGAAGCTGCATTGCTTCCTTACTAGGCCAAGGAGGCCCTGACAATTACAGAATCAAATGGCGCTGGCTACGATATTTTAACAATGATTGCGACCGTCGTGATCTTATTACCTGCGGTGCATCCTCAGGAGTTTGTGCAGCTTTCAGATCCCCTGTTGGTGGAGTTCTCTTCGCCCTTGAAGAGGTAGCAACCTGGTGGAGAAGTGCTCTTCTATGGAGAACATTTTTTTGTACTGCTGTTGTGGTGGTAGTGCTTAGGGCCTTCATTGAAATCTGCAACTCAGGGAAATGTGGCCTTTTCGGTGCAGGCGGGCTGATCATGTTTGATGTTAGCAATGTCACTGTTAGGTACCATGTGATGGATATCCTACCGGTTGTAGTCATTGGAATCATTGGAGGGTTATTGGGAAGCCTTTATAATCATCTTCTACACAAGGTCCTCAGACTCTACAATCTCATCAATCAGAAAGGAAAAGTGCATAAAGTCCTCCTAAGTCTTGCAGTAGTACTCTTCACATCAGCATGTCAATATGGTCTCCCATTCCTAGCAAAATGCACCCCATGTGATTCATCGCTTAGAGACGCAGAATCCGTTTGCCCCACCAATGGAAGGTCTGGAAATTTTAAACAATTCAATTGCCCACCTGGCCAGTACAACGATCTTGCTACTCTTCTGCTTACCACTAATGACGATGCTGTTCGAAACATATTCTCAACAAACACGCCTCATGAATACCAACCCTCCTCCCTCATAATTTTTTTTGTGCTATATTGCATATTAGGACTAATTACTTTCGGAATTGCTGTGCCAACTGGACTCTTCCTCCCAATCATCCTTATGGGCTCGGCTTATGGCCGCCTTCTTGGTATGTTTATGGGACCTCATACGAAAATTGACCAAGGATTGTTTGCAGTACTTGGTGCAGCCTCCCTCATGGCTGGTTCCATGAGGATGACTGTGTCGCTTTGTGTGATCTTCCTTGAACTTACTAGCAATCTTCTCCTACTACCAATAACAATGATTGTTCTCCTAATAGCCAAAACTGTTGGAGACTGCTTCAACCCTAGCATCTATGAGATTATACTGCATTTGAAAGGCCTTCCTTTCATGGATGCAAATCCTGAATCATGGATGAGAAACCTCACCGTTGGCGAGCTTGTAGATGTAAAACCGGCAGTGATTTCCCTCCAGGGAGTAGAAAAGGTAGCAAAGATAGTAGATGTATTGAAAAACACTACACATAATGGTTTCCCAGTGATGGACGATGGGGTAGTACCGCCAGTAGGACAGGCCAACGGGGCAACAGAATTGCATGGACTAATTCTAAGAGCACACCTTATTCAAGCATTAAAGAAGAAGTTCTTCTTGAAAGAGAGAAGAAGAACAGAGGAATGGGAAGTGAGACAGAAATTTACCTGGGTAGAGCTGGCTGAGAGAGAAGGGAAAATTGAAGAGGTGGCTATAACGAGAGAAGAAATGGAGATGTTTGTTGATCTACATCCTCTCACCAATACAACTCCATTTACTGTGCTAGAGAGCATATCAGTAGCAAAAGCGATGATCCTCTTCAGGCAAGTTGGACTTCGACATCTGCTTGTAGTTCCGAAATACCAAGCATCGGGGGTATCCCCTGTTGTTGGGATTTTGACCAGACAAGATCTATTGGCCTACAACATTCTGACAGTCTTTCCTCACCTGGCGAAATCTAAAAGCAGACAGAAGAGAAATTGA 2391 0.4216 MGESSMNLVESATRNNKMEEVEREEEQEQEMDPESNNPLHQTLIKRNRTLSSNPLALVGEKVSYIESLDYEINENDLFKHGWRSRSRVEALQYIFLKWLLASLVGFLTGIIATLINLAVENIAGYKFLAVLQYINGERYLTGFLYFAGVNFVLTFVAAILCVCFAPTAAGPGIPEIKAYLNGVDTPNMFGATTLIVKIIGSIGAVSAGLDLGKEGPLVHIGSCIASLLGQGGPDNYRIKWRWLRYFNNDCDRRDLITCGASSGVCAAFRSPVGGVLFALEEVATWWRSALLWRTFFCTAVVVVVLRAFIEICNSGKCGLFGAGGLIMFDVSNVTVRYHVMDILPVVVIGIIGGLLGSLYNHLLHKVLRLYNLINQKGKVHKVLLSLAVVLFTSACQYGLPFLAKCTPCDSSLRDAESVCPTNGRSGNFKQFNCPPGQYNDLATLLLTTNDDAVRNIFSTNTPHEYQPSSLIIFFVLYCILGLITFGIAVPTGLFLPIILMGSAYGRLLGMFMGPHTKIDQGLFAVLGAASLMAGSMRMTVSLCVIFLELTSNLLLLPITMIVLLIAKTVGDCFNPSIYEIILHLKGLPFMDANPESWMRNLTVGELVDVKPAVISLQGVEKVAKIVDVLKNTTHNGFPVMDDGVVPPVGQANGATELHGLILRAHLIQALKKKFFLKERRRTEEWEVRQKFTWVELAEREGKIEEVAITREEMEMFVDLHPLTNTTPFTVLESISVAKAMILFRQVGLRHLLVVPKYQASGVSPVVGILTRQDLLAYNILTVFPHLAKSKSRQKRN 796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi225g00001 796 ProSiteProfiles CBS domain profile. 723 789 IPR000644 -
Vivi225g00001 796 PRINTS Plant CLC chloride channel signature 282 290 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vivi225g00001 796 PRINTS Plant CLC chloride channel signature 441 457 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vivi225g00001 796 PRINTS Plant CLC chloride channel signature 296 306 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vivi225g00001 796 PRINTS Plant CLC chloride channel signature 314 321 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vivi225g00001 796 PRINTS Plant CLC chloride channel signature 71 79 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vivi225g00001 796 Coils Coil 9 29 - -
Vivi225g00001 796 SMART cbs_1 612 671 IPR000644 -
Vivi225g00001 796 SMART cbs_1 726 779 IPR000644 -
Vivi225g00001 796 SUPERFAMILY CBS-domain pair 594 777 IPR046342 -
Vivi225g00001 796 CDD CBS_pair_voltage-gated_CLC_euk_bac 610 777 - -
Vivi225g00001 796 Gene3D - 592 782 IPR046342 -
Vivi225g00001 796 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 17 781 - -
Vivi225g00001 796 Gene3D Clc chloride channel 89 591 - -
Vivi225g00001 796 MobiDBLite consensus disorder prediction 1 38 - -
Vivi225g00001 796 SUPERFAMILY Clc chloride channel 75 592 IPR014743 -
Vivi225g00001 796 CDD ClC_6_like 66 590 - -
Vivi225g00001 796 Pfam Voltage gated chloride channel 154 570 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vivi225g00001 796 PRINTS Chloride channel signature 489 509 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vivi225g00001 796 PRINTS Chloride channel signature 539 558 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vivi225g00001 796 PRINTS Chloride channel signature 197 216 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vivi225g00001 796 PRINTS Chloride channel signature 166 183 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vivi225g00001 796 PRINTS Chloride channel signature 577 591 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vivi225g00001 796 PRINTS Chloride channel signature 261 280 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vivi225g00001 796 PRINTS Chloride channel signature 521 537 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vivi225g00001 796 FunFam Chloride channel ClC3 89 414 - -
Vivi225g00001 796 Pfam CBS domain 725 777 IPR000644 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi225g00001 32 790 Ion Channels AT3G27170 79.842 0.0 1238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi225g00001 K05016 - gmx:100788620 1367.44