Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi224g00016 ATGGCTAAGAGTGTTAAGAATATTAAGGAATCAGGTACAAGGAATCCAATAACTAGTCTTGATGCACATATGTATCTGAAAGAAATAAAGGATGCATTTAAAGATGAGAAGTACAAGTACAAAGTATTTTTAAGGGCCATGAAAGATTTCAATTTAAGAAGAATTGATATTGTAGGTGTGATGGAAAGAGTGGAGAAATTGTTTCAAAGGCATACAGAATTATTATTAAAATTTAATAACTTTTTGCCAGATGGATTTGAAATCAAACCTTCACCAAAGAAGCCAAATTTTCCAGTAATGAATAAAGAAGATGCTGACAAATATTTGGACAAGGTGAAGACTCGGTTTCAACATCAACCATATGTATATGATTCATTTGTAGACATGATGATCATGTATAAAAACAAAGATAAGAGTCTCGAGGAGATTTATGAAATGGTTGCTTCACTTTTTAAAGATCATCATGATCTTGTCGATGGATTTACAAATTTTCTTCTATAA 501 0.3074 MAKSVKNIKESGTRNPITSLDAHMYLKEIKDAFKDEKYKYKVFLRAMKDFNLRRIDIVGVMERVEKLFQRHTELLLKFNNFLPDGFEIKPSPKKPNFPVMNKEDADKYLDKVKTRFQHQPYVYDSFVDMMIMYKNKDKSLEEIYEMVASLFKDHHDLVDGFTNFLL 166
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vivi224g00016 166 FunFam Paired amphipathic helix protein Sin3 21 83 - -
Vivi224g00016 166 Pfam Paired amphipathic helix repeat 39 82 IPR003822 GO:0006355
Vivi224g00016 166 Pfam Paired amphipathic helix repeat 122 165 IPR003822 GO:0006355
Vivi224g00016 166 SUPERFAMILY PAH2 domain 101 165 IPR036600 GO:0006355
Vivi224g00016 166 PANTHER SIN3B-RELATED 20 165 IPR039774 GO:0003714
Vivi224g00016 166 FunFam Paired amphipathic helix SIN3-like protein 98 166 - -
Vivi224g00016 166 Gene3D Paired amphipathic helix 104 165 IPR036600 GO:0006355
Vivi224g00016 166 Gene3D Paired amphipathic helix 21 83 IPR036600 GO:0006355
Vivi224g00016 166 SUPERFAMILY PAH2 domain 14 84 IPR036600 GO:0006355
Vivi224g00016 166 ProSiteProfiles PAH domain profile. 15 85 IPR003822 GO:0006355
Vivi224g00016 166 ProSiteProfiles PAH domain profile. 97 166 IPR003822 GO:0006355
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi224g00016 8 117 WRKY Transcription Factor Family AT4G12020 34.545 1.49e-13 65.9
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vivi224g00016 PAH 7.1e-13 No_clan