Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi224g00002 ATGCCCGCCGGCATGGACATGTCACTCGACGATATCATCAACACCACCACCGCTCGCCGCCGATTCACCGGAACTCACGGACCAAACCGCAACGTCGGTGTTCGTAACACGATCAGAATCACGCCGTACTCTATTCCTCCGTCTCAGATTGCTAGAGAATCGTTGCGAAGAAGAAGTAGCGTCGATGTTCCGGAAACGATTATCGATCGTGACGCTGTTCAAACTCGACCTATCACTAAACTCTATTTGTCTAACTTGGATGATAGGGTTTCCAACGAAGATATTCATCTGTTGTTCTCGGAGGAAGGTGCGTTGGAAAGGTATTCCATTCATTATGATCAGTTTGGGAGATCAAAAGGAACAGGAGAAGTTGTCTTTACAAAGCAGTCTGATGCTTTATCAGCCCTCAAAAGGTACAACAATATGAAGCTTGATGGAAAGACATTGCAAATTGAGCTTGTCGGAATTGGAACAAGTTCTATTACTCCTGCCAATACCCCTCTCAGTCAAAGCAGCATACTGGGAAGACCAGATGATCGCGTCTTTGCAAAAAGCAGCATACTGGGAAGACCAAATGATCGTGTCTTTGCAAGGGAAGAAAGGAAGATTGGAGGTAGCAGGTACCTTAACAGCTTTACACATGGTGGATATCTTCCAATGGGCCATGGAGAAGAGAAGTGGATAAGGAAAGTGTCTTTTAGAGCTATCGGTCGTGACTTTGGGAGGTATGACCGCCGCCCCGTAGAAGCAAAACGCAATTTCCAAAAGTTGTCTGTGAAAGATCTTGATGAAGATCTGGATAAGTATCACCTAGAGGCTATGCGGATTAGCAAAGAAAATGGAAAGGGAAATCGGGATTGA 861 0.4553 MPAGMDMSLDDIINTTTARRRFTGTHGPNRNVGVRNTIRITPYSIPPSQIARESLRRRSSVDVPETIIDRDAVQTRPITKLYLSNLDDRVSNEDIHLLFSEEGALERYSIHYDQFGRSKGTGEVVFTKQSDALSALKRYNNMKLDGKTLQIELVGIGTSSITPANTPLSQSSILGRPDDRVFAKSSILGRPNDRVFAREERKIGGSRYLNSFTHGGYLPMGHGEEKWIRKVSFRAIGRDFGRYDRRPVEAKRNFQKLSVKDLDEDLDKYHLEAMRISKENGKGNRD 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi224g00002 286 SUPERFAMILY RNA-binding domain, RBD 73 153 IPR035979 GO:0003676
Vivi224g00002 286 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 79 156 IPR000504 GO:0003723
Vivi224g00002 286 SMART rrm1_1 80 152 IPR000504 GO:0003723
Vivi224g00002 286 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 81 149 IPR000504 GO:0003723
Vivi224g00002 286 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 5 274 - -
Vivi224g00002 286 Coils Coil 259 279 - -
Vivi224g00002 286 Gene3D - 71 154 IPR012677 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi224g00002 81 154 Eukaryotic Initiation Factors Gene Family AT2G23350 37.838 1.45e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi224g00002 K12881 - gmx:100785926 229.18