Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi224g00001 ATGTCCACCGGCAGGGACATATCACTCGACGACCTCGTCAACACCTCCACCGCTCGCCGCAGATTCACCGCCGCTCACGGACCAAACCGCAACACCGGCGTTCGTAATCCGATCAGAACCACGCCGTACTCTATTCCTCCGTCTCAGGAAATGATGCAAATGCAGGCTGCTAGAGAAGCGTTGCGAAGAAGAAGAAGTACCGTCGATGTTCCGGAAACGATTCTCGATCACGACGCTGTTCAACCACGACCTATCACTAAACTCTATTTGTCTAACTTGGATCATAGGGTTTCCAACGAAGATATTAATCTGTTGTTTTCGGAAGAGGGTGTTTTGGAAAGGTATTCCATTCATTATGATCACTTTGGGAGACCAAGAGGAACAGCAGAAGTTGTCTTTACAAGGCAGTCTGATGCCTTATCAGCCTTCAAAAGGTACAATAATACGAGGCTTGATGGAAAGCCAATGCAAATTGAGCTTGTTGGAATTGGAACAAGCTCTAATATTACTCCTGCCGATACGCGAATTGGAAGCCCTGTTACTCCGGCCGATACGCTTGCTCCTCCTGCTGATACTCCTCTTGGTCAAAGCAGCATACCGGGAAGACCAAATGATCGTGTCTCTGCAAGGGAAGAAAGGAATAATGGAAGCAGCAGGTGCCATAATAGCTTAAGATATACCTATCTTCCAATGGGCCGTGGACAAGAGATGTTCCTTATGAGGCAAATATCTCTTGGAGCTACTGGTCCCGACTTTTGGAGTTATGACCGTAGCCGCGAAGAATGA 786 0.4771 MSTGRDISLDDLVNTSTARRRFTAAHGPNRNTGVRNPIRTTPYSIPPSQEMMQMQAAREALRRRRSTVDVPETILDHDAVQPRPITKLYLSNLDHRVSNEDINLLFSEEGVLERYSIHYDHFGRPRGTAEVVFTRQSDALSAFKRYNNTRLDGKPMQIELVGIGTSSNITPADTRIGSPVTPADTLAPPADTPLGQSSIPGRPNDRVSAREERNNGSSRCHNSLRYTYLPMGRGQEMFLMRQISLGATGPDFWSYDRSREE 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi224g00001 261 CDD RRM_THOC4 86 160 - -
Vivi224g00001 261 MobiDBLite consensus disorder prediction 178 219 - -
Vivi224g00001 261 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 6 209 - -
Vivi224g00001 261 Gene3D - 52 228 IPR012677 -
Vivi224g00001 261 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 86 163 IPR000504 GO:0003723
Vivi224g00001 261 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 88 156 IPR000504 GO:0003723
Vivi224g00001 261 SMART rrm1_1 87 159 IPR000504 GO:0003723
Vivi224g00001 261 SUPERFAMILY RNA-binding domain, RBD 45 160 IPR035979 GO:0003676
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi224g00001 88 161 Eukaryotic Initiation Factors Gene Family AT2G23350 31.081 1.59e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi224g00001 K12881 - gmx:100785926 178.333