Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi223g00012 ATGGCATTCCCTCCCGATGAACCCGTCGGAGGACTCGCCACCGAAGAAGACACCACCATTGACATCCACACCACCCACGGCGCCCCCATTCGCTACCTCCCTCTCGATCATCTCTACTCTTCCACATCCCCTTGCAGCGGCTCCTCCAACGTCATGTCCAAAAAAGTTAAAGCTCGTAAACTCACCCTAACCACAGCCACTACTCCCAACCACAGCGAAGACGATAACAATAATAACATCCACTTCAATGGTGAAATCGAAATCGATATTGATTATCCGATTGATGATGATAAGAAAACCACGTCTACATCTATGGTGGTTTACACTAAACCGCCTCTTCTGTATGTTTACTCTCGGAGAAGAAAGAGGAGTTCGATTCCGGTGTCGTTTCGCGATTCGTTGTTAAGGAGGCGGGAGGAGATGGATGCTGAGAGGACTGTGTTGAAGAGGAGGAGAATTGGGAATAATGAATTGGAGAGATTAGGGATTGATTGGAATGCGTTGGGGAAAATTGATGGACCGAGGTTGAGGGAATGTAGGAATCCAATTGGGAATTCTGGTGTTGATGGGAGGAATAATGATAATAACAAGTGTAGTTCTGCTGTTAAGGTTCCGAGGTTGGCGCCGGAGTCTTACTCGATGAAGCGATGGGTCGCGTTGAGTTTTGATGGCGCCGATCCCAAGGCTTTTGTCGGATTGAAATGCAAGGTTTACTGGCCCATGGATTCAAAATCATACACTGGCCATGTCAAAAGTTATGACAGGGAAGCCAATATACATCATATTGAGTATGATGATGGAGATGAGGAAAATTTAACTCTTTCAAATGAAAATGTAAAATACCATGTTTCTCGAAATGACATGGAACGCTTAAAATTGAGTTACGCCAAAGTTCGTGACAGTAATGTCTCTGATTATGATGTTGAAGAGATGCTCGCACTGGCTGCAAGCATGGATGATTGCCAAGACTTTGAGCCAGGGGATATCATATGGGCGAAGCTTACAGGTTATGCAATGTGGCCTGCTGTTGTCCTGGATGAATCACTTGCTAGCAGCTGTAAGGGTCTAAAAACATTCATAGGGGGGAGATCGGTTCCTGTCCAATTTTTTGGCACCCATGACTTTGCAAGAGTTCGACTGCAACAGGTGAAATCATTTCTCAATGGACTTCTAACAGATCTACACTCAAAGTGCAAGAAACAGAGTTTCATCGATGGTTTAGAAGAGGCAAAAAGGTATTTAAGTGCACAGAAGCTTCCTTTGGAGATGATAGAACTGCGGAAAAGATGTACAGCTGATAACCATAACAATATAAGGGGAGAGAATGGAGGATGTACAGATTCTGGTGAAGACTGTGTAAATGACAAAGGGACTTGGGCAGCACTTCGAAACATTGATACTTTTCCTTATGAAGTGGGAGACTTGCAAATTCTAAGCCTTGGAAAAATAGTTGGAAATTCCACTGCTTTTAGGGATGGAAAATCCATCTGGCCTGAAGGGTACACAGCAGTGAGGAAATTCACTTCAGTTACTGACCCTAAAGTATCCGTCCCTTATAAGATGGAGGTTCTGAGAGACCCAGAATCCAGAATCAGACCATTATTCAGAGTGACAGTTGATGGTGGTGAGCAGTTCAATGGTTATACGCCATCTACTTGCTGGAATCAAATATACGAAAGGATAAAGAAATTGGAAAAGGTTGTTTCTGAAAGTTCCGTTGCTGATGGTGACATAGAAAGTGTCTACGAATCCGGCTCTGATATGTTTGGTTTTTCCAATTCTAAAGTGGCTAAACTTATTAAGGGATTATCTAAGTCCAAAGTCTCTTTGAAGAAATCAACGTGCAAGTCAGGTTCCGGATTGCCTCTTGGTTATAGACAAGTTCATATTAATTGGTTTGATCTCGATAAGTGCAATGTGTGCCATATGGACGAGGAGTATGAGACCAATCTGTTTCTGCAGTGTGACAAATGTAGAATGATGGTCCATGCTAGATGCTATGGAGAATTGGAACCTGTAAATGGAGTGCTATGGTTATGCAAATTATGTCGTTCGGGTGCTCCTCCCCCACCATGTTGCTTATGTCCACTCATAGGTGGTGCAATGAAGCCTACTACAGATGGCCGGTGGGCTCATTTGGCTTGTGCGATGTGGATACCTGAAACTTGCTTAGCTGATGTCAAGAGAATGGAGCCTATTGATGGTTTGAGTAGAATCAGTAAGGACCGTTGGAAATTGTTATGCAGCATATGTGGTGTATCTTATGGTGCCTGCATCCAATGTTCAAACAATTCTTGTCGCGTAGCGTATCATCCACTCTGTGCACGTGCAGCTGGTCTTTGCGTTGAGCTTGAAAGCGAGGACAGGCTCCATCTACTATCCCTAGATGACGATGAGGATCAGTGCATTCGCTTACTTTCTTTTTGCAAGAGACATAGGCAGCCATCTCATGAAAATTCTGTAGCCGATGAACGTGTTCAGATTATTGGTCAATGTTCAGATTATAAACCACCACCCACTTCATCTGGTTGTGCCCGAAGTGAGCCATATGATTACTCTGGTCGGAGAGGCAGAAAAGAACCTGAAGTACTTGCAGCTTCTTCGCTGAAACGTTTGTTTGTGGAGAATCAACCATATTTAGTTGGTGGATACTGCCAACATGGATTGTTGAACGCCCTAGAGCCTTCTGGCAGAGGAGTTTGCTCTAAATTCTTTTGTAGCGAGCAAAGGCTAAGAACGTCGATGAGTGATTCTGCAGACAACATACTTAGTGTTCCTGAGAAATATAAGTACATGAAGGAAACCTTCCGGAAGCAGTTGGCATTTGGGAAATCAAGAATTCATGGATTTGGCATCTTCGCAAAGCATCCATATAAAGGTGGAGACATGGTGATTGAATATACCGGTGAACTTGTTAGACCTTCTATTGCTGATCGAAGAGAGCATTTTATATACAATTCTTTGGTGGGTGCTGGAACATATTTGTTTCGGGTTGATGATGGAAGAGTCATTGATGCCACCAGAGCAGGAAGCATCGCTCATTTAATTAATCATTCCTGTGCACCAAATTGCTATTCAAGAGTCATTAGTGTTAACGGGGACGAGCATATTATAATATTTGCAAAGAGGGACATTAACCAATGGGAAGAGCTTACATATGATTATAGATTTTTCTCAATAGACGAGCGGCTTGCTTGTTACTGTGGCTTCCCAAAATGTCGAGGTGTAGTAAATGATACTGAGGCAGAAGAGCGAGCTGCTACCATATATGTACCGCGAAGTGAATTAGTAGATTGGAAAGGAGAATGA 3309 0.4328 MAFPPDEPVGGLATEEDTTIDIHTTHGAPIRYLPLDHLYSSTSPCSGSSNVMSKKVKARKLTLTTATTPNHSEDDNNNNIHFNGEIEIDIDYPIDDDKKTTSTSMVVYTKPPLLYVYSRRRKRSSIPVSFRDSLLRRREEMDAERTVLKRRRIGNNELERLGIDWNALGKIDGPRLRECRNPIGNSGVDGRNNDNNKCSSAVKVPRLAPESYSMKRWVALSFDGADPKAFVGLKCKVYWPMDSKSYTGHVKSYDREANIHHIEYDDGDEENLTLSNENVKYHVSRNDMERLKLSYAKVRDSNVSDYDVEEMLALAASMDDCQDFEPGDIIWAKLTGYAMWPAVVLDESLASSCKGLKTFIGGRSVPVQFFGTHDFARVRLQQVKSFLNGLLTDLHSKCKKQSFIDGLEEAKRYLSAQKLPLEMIELRKRCTADNHNNIRGENGGCTDSGEDCVNDKGTWAALRNIDTFPYEVGDLQILSLGKIVGNSTAFRDGKSIWPEGYTAVRKFTSVTDPKVSVPYKMEVLRDPESRIRPLFRVTVDGGEQFNGYTPSTCWNQIYERIKKLEKVVSESSVADGDIESVYESGSDMFGFSNSKVAKLIKGLSKSKVSLKKSTCKSGSGLPLGYRQVHINWFDLDKCNVCHMDEEYETNLFLQCDKCRMMVHARCYGELEPVNGVLWLCKLCRSGAPPPPCCLCPLIGGAMKPTTDGRWAHLACAMWIPETCLADVKRMEPIDGLSRISKDRWKLLCSICGVSYGACIQCSNNSCRVAYHPLCARAAGLCVELESEDRLHLLSLDDDEDQCIRLLSFCKRHRQPSHENSVADERVQIIGQCSDYKPPPTSSGCARSEPYDYSGRRGRKEPEVLAASSLKRLFVENQPYLVGGYCQHGLLNALEPSGRGVCSKFFCSEQRLRTSMSDSADNILSVPEKYKYMKETFRKQLAFGKSRIHGFGIFAKHPYKGGDMVIEYTGELVRPSIADRREHFIYNSLVGAGTYLFRVDDGRVIDATRAGSIAHLINHSCAPNCYSRVISVNGDEHIIIFAKRDINQWEELTYDYRFFSIDERLACYCGFPKCRGVVNDTEAEERAATIYVPRSELVDWKGE 1102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi223g00012 1102 Pfam SET domain 949 1055 IPR001214 GO:0005515
Vivi223g00012 1102 ProSiteProfiles FYR domain FYRC motif profile. 530 616 IPR003889 GO:0005634
Vivi223g00012 1102 SMART PostSET_3 1062 1078 IPR003616 -
Vivi223g00012 1102 FunFam Histone-lysine N-methyltransferase 871 1095 - -
Vivi223g00012 1102 PANTHER PHD FINGER PROTEINS 41 1084 - -
Vivi223g00012 1102 Pfam F/Y-rich N-terminus 473 523 IPR003888 GO:0005634
Vivi223g00012 1102 Gene3D SET domain 898 1090 IPR046341 -
Vivi223g00012 1102 MobiDBLite consensus disorder prediction 837 856 - -
Vivi223g00012 1102 Pfam PHD-finger 649 684 - -
Vivi223g00012 1102 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 687 815 IPR013083 -
Vivi223g00012 1102 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 630 686 IPR013083 -
Vivi223g00012 1102 Gene3D - 314 423 - -
Vivi223g00012 1102 SMART PHD_3 637 684 IPR001965 -
Vivi223g00012 1102 SMART PHD_3 747 813 IPR001965 -
Vivi223g00012 1102 CDD PWWP_AtATX1-like 325 420 - -
Vivi223g00012 1102 ProSiteProfiles Extended PHD (ePHD) domain profile. 689 813 IPR034732 -
Vivi223g00012 1102 ProSitePatterns Zinc finger PHD-type signature. 638 683 IPR019786 -
Vivi223g00012 1102 CDD ePHD_ATX1_2_like 698 812 IPR041956 -
Vivi223g00012 1102 SMART fyrc_3 534 622 IPR003889 GO:0005634
Vivi223g00012 1102 SMART fyrn_3 482 526 IPR003888 GO:0005634
Vivi223g00012 1102 SUPERFAMILY FYVE/PHD zinc finger 629 699 IPR011011 -
Vivi223g00012 1102 CDD SET_SETD1-like 925 1074 - -
Vivi223g00012 1102 FunFam Histone-lysine N-methyltransferase 687 815 - -
Vivi223g00012 1102 SMART PWWP_4 324 387 IPR000313 -
Vivi223g00012 1102 ProSiteProfiles SET domain profile. 938 1056 IPR001214 GO:0005515
Vivi223g00012 1102 SMART set_7 938 1062 IPR001214 GO:0005515
Vivi223g00012 1102 ProSiteProfiles Post-SET domain profile. 1062 1078 IPR003616 -
Vivi223g00012 1102 CDD PHD_ATX1_2_like 637 683 IPR042010 -
Vivi223g00012 1102 SUPERFAMILY Tudor/PWWP/MBT 320 421 - -
Vivi223g00012 1102 Gene3D - 226 283 - -
Vivi223g00012 1102 CDD Tudor_Agenet_AtEML-like 231 281 - -
Vivi223g00012 1102 Pfam F/Y rich C-terminus 532 605 IPR003889 GO:0005634
Vivi223g00012 1102 ProSiteProfiles FYR domain FYRN motif profile. 467 526 IPR003888 GO:0005634
Vivi223g00012 1102 ProSiteProfiles Zinc finger PHD-type profile. 635 686 IPR019787 -
Vivi223g00012 1102 Pfam PHD-zinc-finger like domain 691 812 - -
Vivi223g00012 1102 SUPERFAMILY SET domain 935 1075 IPR046341 -
Vivi223g00012 1102 Coils Coil 131 151 - -
Vivi223g00012 1102 Pfam PWWP domain 327 414 IPR000313 -
Vivi223g00012 1102 Gene3D - 468 608 - -
Vivi223g00012 1102 ProSiteProfiles PWWP domain profile. 326 389 IPR000313 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi223g00012 618 783 C2H2 Transcription Factor Family AT3G14740 38.596 5.79e-28 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vivi223g00012 zf-HC5HC2H_2 5.5e-33 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi223g00012 - - gmx:100808923 1749.18