Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi222g00030 ATGGCTAGAAAAAAGGTGAAGCTCGCTTTCATTGAGAATGATACTGCAAGGAAATCAACATACAAGAATCGAGAGAAGGGTTTAGTGAAGAAGGTTGATGAACTAGCAACCCTTTGCGGTGTAGAGGCTTGTGCCATAATATATGGCCCCTACGATCCACAACCTGAGATCTGGCCATCGGCGTCCGGAGTACAAAATGTGCTTTCGAAATTCATGACAAAGTCTGAGTTCGAAAAAAGAAAAAAGATGGTGAATCAGGAGAGTTTTCTGAAAGAAAGGATTTCAAAGGCTGAAAAGCAATTTGAAAAACAATGGAAAGACAACAGAGAGAAAGAGAGAAGCATGTTCTTGTTTGAATGTCTCAGTGCTGGGAACGTGGTGCAGAAGGATATGTCGGTGGCTGGTTTGAATCATCTTGCTTGGATGATTGATCAGAATCTTAAGGAGATTGGCAGAAGGATTGAAGCAGATGATAGAAACAGTAATAATCATCAATGTGAAAGCCAAGAACATCTCCAAATGGAACAGTCACTGCTTCTACCATTGGCGCTGCCACCACCAACCATCTCCAATCACTACAACACGCGTGGGCTTTAA 597 0.4221 MARKKVKLAFIENDTARKSTYKNREKGLVKKVDELATLCGVEACAIIYGPYDPQPEIWPSASGVQNVLSKFMTKSEFEKRKKMVNQESFLKERISKAEKQFEKQWKDNREKERSMFLFECLSAGNVVQKDMSVAGLNHLAWMIDQNLKEIGRRIEADDRNSNNHQCESQEHLQMEQSLLLPLALPPPTISNHYNTRGL 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi222g00030 198 PANTHER MADS BOX PROTEIN 3 122 - -
Vivi222g00030 198 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vivi222g00030 198 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vivi222g00030 198 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vivi222g00030 198 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Vivi222g00030 198 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vivi222g00030 198 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Vivi222g00030 198 SUPERFAMILY SRF-like 3 95 IPR036879 GO:0003677|GO:0046983
Vivi222g00030 198 Coils Coil 80 100 - -
Vivi222g00030 198 Gene3D - 13 116 IPR036879 GO:0003677|GO:0046983
Vivi222g00030 198 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Vivi222g00030 198 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi222g00030 1 168 Type I MADS-box Gene Family AT5G48670 54.762 6.68e-53 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vivi222g00030 SRF-TF 1.2e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi222g00030 - - vvo:131640499 248.44