Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi222g00029 ATGGCTAGAAAAAAGGTGAAGCTCGCTTTCATTGAGAATGATACCGCAAGGAAATCAACATACAAGAATCGAGAGAAGGGTTTAGTGAAAAAGATTGATGAACTAGCAACCCTTTGCGGTGTAGAGGCTTGTGCCATAATATATGGCCCCTACGAACCACAACCTGAGATCTGGCCATCCGCTTCCGGAGTACAAAATGTGCTTTCGAAATTCATGACAAAGTCTGAGTTCGAACAAAGAAAAAAGATGGTGAATCAGGAGAGTTTTCTGAAAGAAAGGATTTCAAAGGCTGAAAAGCAATTTGAGAAGCAATGGAAAGACAACAGAGAGAAAGAGAGAACCATGTTCTTGTTTGAATGTCTCAGTGCTGGGAACGTGGTGCAGAAGGATATGTCGGTGGCTGGTTTGAATCATCTTGCTTGGATGATTGATCAGAATCTTAAGGAGATTAGCAGAAGGATTGAAGCAGATGATAGAAACAGTAATATTCATCAATGTGAAAGCCAAGAACATCTCCAAATGGAACAGTCATTGCTGCTACCATTGCCGCTGCTACCACCAACCATGTCCAATAATGAAGACATTGCAATGATGAGTCATTGCCATCTTCCACCACCACCGCCACCACAACCAACCGTGCCGAATAATGATGAAATTGCAATGAATAATAATGACATCATGATGAATGGTTATGATGCATATCTGTAG 708 0.4138 MARKKVKLAFIENDTARKSTYKNREKGLVKKIDELATLCGVEACAIIYGPYEPQPEIWPSASGVQNVLSKFMTKSEFEQRKKMVNQESFLKERISKAEKQFEKQWKDNREKERTMFLFECLSAGNVVQKDMSVAGLNHLAWMIDQNLKEISRRIEADDRNSNIHQCESQEHLQMEQSLLLPLPLLPPTMSNNEDIAMMSHCHLPPPPPPQPTVPNNDEIAMNNNDIMMNGYDAYL 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi222g00029 235 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Vivi222g00029 235 SUPERFAMILY SRF-like 3 95 IPR036879 GO:0003677|GO:0046983
Vivi222g00029 235 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 169 - -
Vivi222g00029 235 Coils Coil 80 100 - -
Vivi222g00029 235 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
Vivi222g00029 235 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Vivi222g00029 235 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Vivi222g00029 235 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vivi222g00029 235 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Vivi222g00029 235 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vivi222g00029 235 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi222g00029 1 190 Type I MADS-box Gene Family AT5G48670 50.526 6.21e-53 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vivi222g00029 SRF-TF 2.8e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi222g00029 - - vvo:131658560 296.204