Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi222g00020 ATGTCTGAAACCTTAAGGAATCTCTCACTTTCTCCCAAAAACTTCTCCTTCACCTTCACCTTGTTTCTCTTATTAAACTCTTTTCTTCTCATTCCATTTTCTTACTCTTACTCACCACTCAATGAACAAGGACAGGCTCTTCTAGCATGGAAAAACAGCTTAAACAATACTTCAGAATCTTTAGAAGCACTGTCATCATGGAACTCTTTGGCCACAACACCATGCAGCAACTGGTTTGGAGTGTTTTGCAATCCACAAGGAGATGTGATAGAGATAAACTTGAAATCGTTGCGTTTACAAGGCGAGTTGCCTTCGAATTTTCAGCCGCTGAAGTCCTTGAAGAGACTCATCCTCTCATCAACAAACCTCACCGGAAGGATACCGAAAGAGATTGGAGATTATCACGAGCTCGCTGTCGTTGATCTAAGTGGAAACTCTTTGGTTGGTGAAATACCAGAAGAAGTTTGCAGGCTAAGCAAGCTTGAGAGTTTGTTTCTTCACACGAATTTCTTCGAAGGAGACATTCCGTCCGACATTGGAAATCTAACTAGTCTTGTGAACTTTACACTCTATGATAATCATCTGAGTGGCGAAATTCCAAAGAGTGTTGGTTTGTTGAACAAGCTTCAAGTGTTTAGAGCTGGTGGGAATAAGAATCTCAAAGGTGAGATTCCTTTCGAGATTGGAAACTGCACAAACTTGATCCTATTAGGCCTTGCAGAAACAAGTATTTCCGGAAGCATTCCTTCTTCGATCCAAATGCTGAAGAGAATCAGAACTATAGCCATTTACACGACTCTCTTATCGGGCTCGATTCCACCAGAGATTGGAAATTGCAGTGAGTTGCAGAATCTTTACTTGTATCAGAACTCGCTCTCGGGTTCAATTCCATCTCAAATCGGAGAACTCAACAATTTGAAGAGTTTACTCTTATGGCAGAACAATTTAGTAGGTACTATACCAGAAGAGCTTGGAAGGTGCAAAGAGATTCAAGTCATTGACTTTTCGGAAAATCTTTTAACAGGTAGCATACCGAAGATTCTCGGGGAGCTTTCAAATCTTCAAGAGCTTCAACTGAGTGTGAATCATCTCTCGGGTATCATACCTGCCGAGATTTCAAATTGCGTTTCATTGACTCAACTTGAAGTTGACAACAATGCTCTATCTGGTGAGATTCCTCCTCTTATTGGCAACTTGAGAAGCTTGAATTTGTTCTTTGCATGGCAGAACAAGTTAACAGGAAAAATTCCGGATAGTCTTTCGGATTGTCAAGAACTTCAATCACTCGATCTTTCTTACAATAATTTGATCGGTACAATACCGAAAAAGCTATTCAATTTGAGGAACCTCACAAAACTTTTGCTTATTTCCAACGATTTATCGGGTTTTATACCACCTGATATAGGAAACTGCACAAACCTCTATAGACTTAGACTGAATCACAATAGAATATCAGGTGACATTCCGAATGAGATCGGTAACTTGAAAAGTTTGAATTTTGTGGATATAAGTAGCAATCATCTAGTTGGTGAGATTCCTTCAACACTTTCTGGATGTCAAAATCTTGAGTTTCTTGACTTTCATTCGAATAGTCTTACCGGTTCGATTCCAGATTCTCTTCCTAAAAGCCTACAATTGATTGATTTGTCCGACAATAGTCTATCAGGTGAATTGAGTCACACCATTGGTTCGTTAGTCGAGTTAAGCAAACTAAACTTAGGAAAGAATCAATTAAGTGGAAGAATCCCATCAGAGATTTTGTCTTGTACTAAGCTGCAGCTTCTAGACCTTGGAAGCAACGGTTTCACCGGAGAAATTCCGAAGGAATTGAGTCTAATTCCTTCACTAGAAATCTCTCTTAATCTCAGTTTCAACCATTTTTCTGGTGAAATACCATCACAATTCTCGAGTCTTAGAAAACTCGGAGTGCTTGATCTCTCACATAACAAACTCTCTGGGAATTTAGATTCTCTTTCCGACCTTGAAAATCTTGTTTTGTTAAATGTTTCCTTCAATGCCTTCTCTGGTAAGTTACCTAACACTCCTTTCTTTCGTAAACTCCCTCTTAGCGATCTTGCCGAAAACGAAGGACTTTACATTGCTGGAGATATTGCAACTCCTGGTGATAGAATGGAATCCAAAGGACATGCAAAACCGGTTATGAAATCTGTTATGTCTATTCTATTAAGCACGAGTGCGGTGGTAGTTCTGCTCACAGTCTATGTCTTGATTCGTTCGCACATGGCAGAAAAATCGCTCATGGAAAATGAAAGTTGGGAGGTGACTTTGTATCAAAAGTTTGATCTCTCCATTGACGACATTGTCTTGAATCTGACATCGTCCAACGTGATTGGCACCGGAAGTTCAGGAGTTGTTTACAAGGTAACAATTCCAAACGGTGAAACACTTGCGGTTAAAAAGATGTGGTCATCAGAAGAATCGGGAGCATTCAATTCCGAAATTCAAACGTTAGGCTCAATCCGACACAAGAACATCATTAGGCTTCTCGGTTGGGGATCCAACAGGAATCTGAAGCTTCTGTTTTACGACTATCTTCCCAACGGAAGCCTTAGCTCGTTACTTCATGGTTCGGGAAAGGGAAAAGCGGAATGGGAAACACGATATGATGTTGTATTAGGTGTGGCTCATGCACTTGCATATTTGCACCATGATTGTGTTCCTGCTATATTGCATGGAGATGTCAAAGCCATGAATGTTTTATTAGGTCCAAGCTATCAACCTTACCTTGCTGACTTCGGCTTAGCAAGAATCGCAACTGAAAATGACGATGATACTAATTCGAAGCCAGCTCAAAGACATTACCTTGCTGGTTCATATGGATACATGGCTCCTGAACATGCATCAATGCAGCCTATAACTGAGAAAAGTGATGTTTACAGTTATGGTATGGTTCTACTTGAGGTCTTAACAGGAAGGCACCCTTTAGATCCATCTCTTCCGGGAGGCGCAAACATGGTTCAATGGGTTAGGAACCATTTATCTAGCAAAGGCGATCCTTCTGAAATTCTCGACACAAAGCTCAGAGGAAGGGCTGACCCTACCATGCATGAAATGCTACAAACTTTAGCAGTATCATTTCTCTGTGTAAGCACGAGAGCGGCTGATCGTCCAGCAATGAAAGACGTCGTTGCAATGCTCAAGGAAATTAAACCGGTTGAGACATCAAGAGCAGACACTGATGTATTGAAACTAGGAGGCTTAACATCATCTCATAATTCTCCACCACCTCCTAAGAATGTACTTTCGCATGGATCTTCTACTTGTTCCTATAATTTCTCGGACGGTTGA 3309 0.4071 MSETLRNLSLSPKNFSFTFTLFLLLNSFLLIPFSYSYSPLNEQGQALLAWKNSLNNTSESLEALSSWNSLATTPCSNWFGVFCNPQGDVIEINLKSLRLQGELPSNFQPLKSLKRLILSSTNLTGRIPKEIGDYHELAVVDLSGNSLVGEIPEEVCRLSKLESLFLHTNFFEGDIPSDIGNLTSLVNFTLYDNHLSGEIPKSVGLLNKLQVFRAGGNKNLKGEIPFEIGNCTNLILLGLAETSISGSIPSSIQMLKRIRTIAIYTTLLSGSIPPEIGNCSELQNLYLYQNSLSGSIPSQIGELNNLKSLLLWQNNLVGTIPEELGRCKEIQVIDFSENLLTGSIPKILGELSNLQELQLSVNHLSGIIPAEISNCVSLTQLEVDNNALSGEIPPLIGNLRSLNLFFAWQNKLTGKIPDSLSDCQELQSLDLSYNNLIGTIPKKLFNLRNLTKLLLISNDLSGFIPPDIGNCTNLYRLRLNHNRISGDIPNEIGNLKSLNFVDISSNHLVGEIPSTLSGCQNLEFLDFHSNSLTGSIPDSLPKSLQLIDLSDNSLSGELSHTIGSLVELSKLNLGKNQLSGRIPSEILSCTKLQLLDLGSNGFTGEIPKELSLIPSLEISLNLSFNHFSGEIPSQFSSLRKLGVLDLSHNKLSGNLDSLSDLENLVLLNVSFNAFSGKLPNTPFFRKLPLSDLAENEGLYIAGDIATPGDRMESKGHAKPVMKSVMSILLSTSAVVVLLTVYVLIRSHMAEKSLMENESWEVTLYQKFDLSIDDIVLNLTSSNVIGTGSSGVVYKVTIPNGETLAVKKMWSSEESGAFNSEIQTLGSIRHKNIIRLLGWGSNRNLKLLFYDYLPNGSLSSLLHGSGKGKAEWETRYDVVLGVAHALAYLHHDCVPAILHGDVKAMNVLLGPSYQPYLADFGLARIATENDDDTNSKPAQRHYLAGSYGYMAPEHASMQPITEKSDVYSYGMVLLEVLTGRHPLDPSLPGGANMVQWVRNHLSSKGDPSEILDTKLRGRADPTMHEMLQTLAVSFLCVSTRAADRPAMKDVVAMLKEIKPVETSRADTDVLKLGGLTSSHNSPPPPKNVLSHGSSTCSYNFSDG 1102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi222g00020 1102 Gene3D Phosphorylase Kinase; domain 1 742 851 - -
Vivi222g00020 1102 ProSiteProfiles Leucine-rich repeat profile. 640 662 IPR001611 GO:0005515
Vivi222g00020 1102 PRINTS Leucine-rich repeat signature 426 439 - -
Vivi222g00020 1102 PRINTS Leucine-rich repeat signature 638 651 - -
Vivi222g00020 1102 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 218 343 - -
Vivi222g00020 1102 PANTHER UNNAMED PRODUCT 311 983 - -
Vivi222g00020 1102 SUPERFAMILY RNI-like 91 403 - -
Vivi222g00020 1102 Gene3D Transferase(Phosphotransferase) domain 1 852 1071 - -
Vivi222g00020 1102 ProSitePatterns Serine/Threonine protein kinases active-site signature. 896 908 IPR008271 GO:0004672|GO:0006468
Vivi222g00020 1102 Gene3D Ribonuclease Inhibitor 348 439 IPR032675 -
Vivi222g00020 1102 Gene3D Ribonuclease Inhibitor 619 703 IPR032675 -
Vivi222g00020 1102 Gene3D Ribonuclease Inhibitor 440 540 IPR032675 -
Vivi222g00020 1102 Pfam Leucine rich repeat 331 388 IPR001611 GO:0005515
Vivi222g00020 1102 MobiDBLite consensus disorder prediction 1071 1102 - -
Vivi222g00020 1102 MobiDBLite consensus disorder prediction 1072 1102 - -
Vivi222g00020 1102 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 747 851 - -
Vivi222g00020 1102 SUPERFAMILY RNI-like 314 675 - -
Vivi222g00020 1102 Pfam Leucine rich repeat N-terminal domain 41 84 IPR013210 -
Vivi222g00020 1102 ProSitePatterns Protein kinases ATP-binding region signature. 784 807 IPR017441 GO:0005524
Vivi222g00020 1102 Gene3D Ribonuclease Inhibitor 40 203 IPR032675 -
Vivi222g00020 1102 Gene3D Ribonuclease Inhibitor 541 618 IPR032675 -
Vivi222g00020 1102 SMART serkin_6 778 1051 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi222g00020 1102 FunFam Leucine-rich receptor-like protein kinase family protein 346 618 - -
Vivi222g00020 1102 SMART LRR_typ_2 495 519 IPR003591 -
Vivi222g00020 1102 SMART LRR_typ_2 110 134 IPR003591 -
Vivi222g00020 1102 SMART LRR_typ_2 565 589 IPR003591 -
Vivi222g00020 1102 SMART LRR_typ_2 303 327 IPR003591 -
Vivi222g00020 1102 SMART LRR_typ_2 638 661 IPR003591 -
Vivi222g00020 1102 SMART LRR_typ_2 158 182 IPR003591 -
Vivi222g00020 1102 SMART LRR_typ_2 447 471 IPR003591 -
Vivi222g00020 1102 SMART LRR_typ_2 351 375 IPR003591 -
Vivi222g00020 1102 SUPERFAMILY Protein kinase-like (PK-like) 775 1053 IPR011009 -
Vivi222g00020 1102 FunFam Leucine-rich receptor-like protein kinase family protein 40 205 - -
Vivi222g00020 1102 Pfam Protein kinase domain 781 983 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi222g00020 1102 Gene3D Ribonuclease Inhibitor 208 347 IPR032675 -
Vivi222g00020 1102 ProSiteProfiles Protein kinase domain profile. 778 1056 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi222g00020 1102 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 852 1071 - -
Vivi222g00020 1102 FunFam Putative LRR receptor-like serine/threonine-protein kinase 619 704 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi222g00020 40 1101 Receptor kinase-like Gene Family AT5G56040 66.137 0.0 1400
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vivi222g00020 Pkinase 2.9e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi222g00020 - - psat:127084696 2024.21