Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi222g00003 ATGAATTCTTTTGTGCAATGCAGTGTGTATAGGAGCACACATTTGATGAGCAAATGCAGAAGTTCACTAGAGCTATTCTTTGCAATATGGTTTGTGATGGGAAATGTTTGGTCATTTGACTCACGTTTTGGAACATTACAACAAGCTCCAAAACTCCAAATCCTATGCATAATCCTTCTTGTTTGGAATGCAATTTGTTACTCTTTCCCTTTTATTCTCTTTTTGTTGCTTTGTTGTTGTGTTCCACTCATTACCATCCTCCTTGGTTATGACATGAACATGGGGTCCTCTTCTAGAGGTGCTTCGGAGGATCAAATCTCACAACTTCCATCTTGGAGATTTAAAGTTGGGCATACCAAATTAGATCTTGACAATGATTCTCAATGCAGTGAAAGATTGATCCGCGATGAGCCGGAATGTTGCATATGTTTGGCCAAATACAAAGACAAAGAAGAAGTTAGGCAACTGCCTTGTTCACATATAATCCATCTAAAATGTGTTGATCAATGGCTAAGAATTATATCATGCTGCCCTCTTTGTAAACAAGAATTACAAAGGTAG 561 0.3797 MNSFVQCSVYRSTHLMSKCRSSLELFFAIWFVMGNVWSFDSRFGTLQQAPKLQILCIILLVWNAICYSFPFILFLLLCCCVPLITILLGYDMNMGSSSRGASEDQISQLPSWRFKVGHTKLDLDNDSQCSERLIRDEPECCICLAKYKDKEEVRQLPCSHIIHLKCVDQWLRIISCCPLCKQELQR 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi222g00003 186 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 7 184 - -
Vivi222g00003 186 Pfam Ring finger domain 139 181 IPR001841 -
Vivi222g00003 186 SMART ring_2 140 180 IPR001841 -
Vivi222g00003 186 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 89 186 IPR013083 -
Vivi222g00003 186 SUPERFAMILY RING/U-box 131 184 - -
Vivi222g00003 186 ProSiteProfiles Zinc finger RING-type profile. 140 181 IPR001841 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi222g00003 11 184 C3H Transcription Factor Family AT4G26580 68.966 1.74e-78 235
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi222g00003 - - vvo:131626799 386.726