Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi222g00002 ATGGTTTCATTTTCTTCAAACTATGCAATAGGAGAAAATAGCATCATGGCTAGTACTAGTAGCATCCAAAACATGCCTCAAACAACTTTATCTCAATCTCAACCTTCTTTTATGACAAGAATGGCTATGAGGATATCAAGATCAAGATGGTTCACTTTTTTGAGAAGAGTGTTTCATTACCAAAATGGACCAAGATCTGATCTTGGTTCTAACCCTTTTAATTCTAGGACTTGGATGATGTTGGAGTTGGTGGCTTTATTGGTTCAAATTACAAGCACAACGTTTACTTTGGTGGTTTCGAAGAGTGAGAAGCCTGTTAGGCCTATGAGGGTGTGGGTTGTGGGATATGATGTTGGATGTGTTCTTAGTTTGTTGTTGCTTTGTGTTCGGTATTGTCAAATTGGTTTGAGTCATGGTGGTGGTGGTGATGATGCTCTTGGTGTTTCTTATGATGTTGAACAACAAACAAACAATGAAGAAAACAGTGTGTATAGGAGCACACATTTGATGAGCAAATGCAGAAGTTCACTAGAGCTATTCTTTGCAATATGGTTTGTGATGGGAAATGTTTGGTCATTTGACTCACGTTTTGGAACATTACAACAAGCTCCAAAACTCCAAATCCTATGCATAATCCTTCTTATTTGGAATGCAATTTGTTACTCTTTTCCTTTTCTTCTATTTTTGTTGCTTTGTTGTTGTGTTCCACTCATTACCATCCTCCTTGGTTATGACATGAACATGGGATCCTCTTCTAGAGGTGCTTCTGATGATCAAATCTCACAACTTCCATGTTGGAGATTTAAAGTTGGGCATACCAAATTAGATCTGGACAATGATTCTCAATGCAGTGAAAGATTGATCCGCGATGAGCCGGAATGTTGCATATGTTTGGCCAAATACAAAGACAAAGAAGAAGTTAGGCAATTACCTTGTTCACATATGTTCCATCTAAAATGTGTTGATCAATGGCTCAAAATCATATCATGCTGCCCTCTTTGTAAACAAGAATTACAAAGGTAG 1023 0.3773 MVSFSSNYAIGENSIMASTSSIQNMPQTTLSQSQPSFMTRMAMRISRSRWFTFLRRVFHYQNGPRSDLGSNPFNSRTWMMLELVALLVQITSTTFTLVVSKSEKPVRPMRVWVVGYDVGCVLSLLLLCVRYCQIGLSHGGGGDDALGVSYDVEQQTNNEENSVYRSTHLMSKCRSSLELFFAIWFVMGNVWSFDSRFGTLQQAPKLQILCIILLIWNAICYSFPFLLFLLLCCCVPLITILLGYDMNMGSSSRGASDDQISQLPCWRFKVGHTKLDLDNDSQCSERLIRDEPECCICLAKYKDKEEVRQLPCSHMFHLKCVDQWLKIISCCPLCKQELQR 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi222g00002 340 ProSiteProfiles Zinc finger RING-type profile. 294 335 IPR001841 -
Vivi222g00002 340 SMART ring_2 294 334 IPR001841 -
Vivi222g00002 340 Pfam RING-like zinc finger 293 321 IPR001841 -
Vivi222g00002 340 SUPERFAMILY RING/U-box 285 338 - -
Vivi222g00002 340 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 18 338 - -
Vivi222g00002 340 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 244 339 IPR013083 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi222g00002 16 338 C3H Transcription Factor Family AT4G26580 61.610 1.24e-132 379
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi222g00002 - - gmx:100818715 508.064