Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi221g00002 ATGGATGAGCTTGTCTGTATTCAAAATTGCGAACCCGATATTTTACTATGGGATAATGAACTCAATGGCAAACCATTACTGATAATGGATACTCCTCCCATGCAACAATTATCATTTTCGGAACGGTTAGAGATTGACGAGCCTATGGCCGTCTGGTTCAAGTGGAAAGGGAAGTGGCATGCAGGCATCAAATGTGCAAGAGATGATTTGCCAATGTCCACTCAGAAAGACAAACCAGTTGACGATAATCAGAACAAATATTTCACCATATTTTCTCCGGATATAAAGAATTATTGTTGGGTTAAAATGATTTCTGTTCAATCGATTAATGAATTTCCTCAGCCTATAGCATATGAAACTCATCAAGATGGCTTGAAAATTGTACAAGACTTGACTATTGCTCGACGCTTTACAATGCAAAACCTCCTCATCGAAATGATTAATATTGTTGAACAAATTCATTCTCATGCTTTGACAGAAGATGCTCGCGATGTGATAGTTTGGAAGCGATTTGCATTGGAAGCTTCTGAGTGTAAAAGCTATTCAGATTTTGGAAGAATGGTTCAACGACTGCAAAAGAGCATAGTGCAGGGTTATATAATGGATGATTGGAAACTGCGTTGTTCTAAGTCTTGGGTTGATCGATGTGCGAAGGCAAAAAATGCAGAAACAATTGAGCTGCTGACTGAGGAACTGGTTGATTCCATATTGTGGAATGATGTTTGCACTCACTGGATTGAAGACCCTGAGCCAAAATTACGTTATGTATGGAAAACATGGAAACATGATGTAATGAAATGGTTTTCAAGGAATCCGTTGTTATCTAGCAGCATCGGCTCGGAGCCACGTGCTTCTAGTTCTTATGGATTGTGCCAAACAAGCTTTCAAGTTGGTTTCAGAAGGCCTAAACTTCAAATTCGTCGTTCGATGCATAAAAGTACCGTGGAGGTGCCCGTGGAATCTGAGTTTCCTAGTCAGTTGATGAAGGAATTGAGTGATATTGGAGTCGAGGCTGTAGATTGTGATGTCTTGCCCATCACAGAAATGGTACCAAGGCCTATGGATGATGAAGAAAGGCCTATGGATGATGAAGAGGCTATTGAATTATTTGTGGAACCTGATATTGATGATACTAAGAGTCGACAATGTGAAAAGTTTATCGAAGCCAAGGGAAGGCAATGTAGAGGACGAGCAATTGGTAGCGATAAATATTGTTGTGCTCATTTCTCAAGAAAACCTGCAAAAGAGGATAAAGCTCCTACCCCAATGTGTGGAGGTACAACTATGGCTGGTACTAAATGCAAGCATCATTCACATCCTGGCTTTTCATTCTGCAGAAAGCATTTGAGCAATGTTGAGACCAAAAATAGATCAAATTTGAAACGTCGTAGATCGAAAAGGAAAGCAAAAGTATACTGCAGTGGTTCGACATCAAAGAGAAGGGTTCGCGAAGACTTAGGCGTGGCACCTCCGAGAAGTCCATTGGATATTGATCCGGTATCGGTCATTGAAGATGATTCTTTTATTGCAAGGAACATTTTAGATGAAACGCTCACGCTTTCTGGTAATGATCATAATGAGGCTCTTCAATGGATAGATTCTCCTCTTAATGACAATGATACTGATAATGATAGTTCAATTAAGTGTAAGGTATGTTTTGAAGAATTTTCCGATGATGAATCACTTTGTAACCATTGGATGGAAAATCATGAAAGGGAAGCACATTGGTTATTCATGAGTTATGCTTGTGCAATTTGTCTTGATTCCTTCACCAACAAGAAACTATTGGAATCGCATGTTCCGAATAGACATCATGTGCAGTTCATTCAACACTGCTTGCTTTTGAAATGTAATGCTTGTGGTGGTAATTTTGGAAATATGGATGAATTTTGGTTGCATGTTAAGTCAATCCACTCTTCCGAATTCAAGGTATCAAAAGCTCCTATGCAACTAACATTGACACATGGTGATGATTCTCTGGAAATGATTGAGCACATAAATGAAGCTTCTTTGGAAGAACCTCAGCCTAACAATCTCAATATCTTATCGATTGCTTGCACAAATTCCTGTGAAGTTAATCTTGAGGCGTCGTTGATGGAGAAATATGGATACTTACCAGAAAGACTTAATTTGAGGGCATCTGAAGATTGCAGTGAGAGAGAAATTCTTGAGAATTCTAGTCGGAATGAGATTCACCCTGTCGTCGTTAGTCCACCCTCATTAAATTTGGGTTCATTGCAAAAGGCTATAGTTTTATGTGGTGACATAAGCTTTGGGAAGGAACCAACTCCAGTGATTTGTGTATTGGATCAAGAAATACTCAATTCTCTTTTTGAAAAAGAGCGATACGTAAATCTTCCTAGCCCTTGGGAAAGTTTCTCCTATGTGACAAAACAAATGCTTGATCGATTTCCTACTCATAATCACGAGAGCCTGCAACTGAGATGTTCTTGTTCCACTTCTACATGTTGTCGTAAAACATGTGATCATATATACCTTTCCGATAATGGTCTTGATCATGCAAAAGATATATTCGGGAAACCAATGCGCGGAGAGTTCCCATACAATAAAAATGGTCAACTCATGTTGAAGGAAGGTTATCCGGTGTACGAGTGTAACGATTTGTGCAGATGTAGTAAAACCTGTCAGAACAGAATATTGCAGAAGGGAATTCAAGTTAAATTGGAAGTCTTTAAAACAAAGGAAAAGGGATGGGGAGTAAGGGCTGGCGAGGACATTCTTCGTGGAACGTTCGTGTGTGAGTATATCGGAGAAGTTGTAGCAAAGAAGGAGGTACACAAAAGGCGAGAAAGATACGGTAAAAACGGTGAATATTTCTATGACATTGGTGCTCATGTTAGTGATATGAGTGGAATTACAGAAGGACACGCCAGCGAATACGTTATTGATTCCACTAATTATGGAAACGTCTCAAGATTCATTAATAGTAGTTGTTCGCCGAATCTTGTGAATTACCAAGTTTTTATAGAGAGCATGAATAGTGAGCATGCACATATTGGTCTTTATGCAAATAGAGATATTGCTTTGGGGGAAGAGTTGACATATAGTTATGACTATGAGTTTGTTGGTGGAGAAGAATATCCTTGTCTTTGTGGATCCTTGAAGTGCAGAAACTGA 3138 0.3923 MDELVCIQNCEPDILLWDNELNGKPLLIMDTPPMQQLSFSERLEIDEPMAVWFKWKGKWHAGIKCARDDLPMSTQKDKPVDDNQNKYFTIFSPDIKNYCWVKMISVQSINEFPQPIAYETHQDGLKIVQDLTIARRFTMQNLLIEMINIVEQIHSHALTEDARDVIVWKRFALEASECKSYSDFGRMVQRLQKSIVQGYIMDDWKLRCSKSWVDRCAKAKNAETIELLTEELVDSILWNDVCTHWIEDPEPKLRYVWKTWKHDVMKWFSRNPLLSSSIGSEPRASSSYGLCQTSFQVGFRRPKLQIRRSMHKSTVEVPVESEFPSQLMKELSDIGVEAVDCDVLPITEMVPRPMDDEERPMDDEEAIELFVEPDIDDTKSRQCEKFIEAKGRQCRGRAIGSDKYCCAHFSRKPAKEDKAPTPMCGGTTMAGTKCKHHSHPGFSFCRKHLSNVETKNRSNLKRRRSKRKAKVYCSGSTSKRRVREDLGVAPPRSPLDIDPVSVIEDDSFIARNILDETLTLSGNDHNEALQWIDSPLNDNDTDNDSSIKCKVCFEEFSDDESLCNHWMENHEREAHWLFMSYACAICLDSFTNKKLLESHVPNRHHVQFIQHCLLLKCNACGGNFGNMDEFWLHVKSIHSSEFKVSKAPMQLTLTHGDDSLEMIEHINEASLEEPQPNNLNILSIACTNSCEVNLEASLMEKYGYLPERLNLRASEDCSEREILENSSRNEIHPVVVSPPSLNLGSLQKAIVLCGDISFGKEPTPVICVLDQEILNSLFEKERYVNLPSPWESFSYVTKQMLDRFPTHNHESLQLRCSCSTSTCCRKTCDHIYLSDNGLDHAKDIFGKPMRGEFPYNKNGQLMLKEGYPVYECNDLCRCSKTCQNRILQKGIQVKLEVFKTKEKGWGVRAGEDILRGTFVCEYIGEVVAKKEVHKRRERYGKNGEYFYDIGAHVSDMSGITEGHASEYVIDSTNYGNVSRFINSSCSPNLVNYQVFIESMNSEHAHIGLYANRDIALGEELTYSYDYEFVGGEEYPCLCGSLKCRN 1045
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi221g00002 1045 ProSiteProfiles SET domain profile. 893 1025 IPR001214 GO:0005515
Vivi221g00002 1045 ProSiteProfiles Post-SET domain profile. 1032 1045 IPR003616 -
Vivi221g00002 1045 ProSitePatterns Zinc finger C2H2 type domain signature. 617 638 IPR013087 -
Vivi221g00002 1045 ProSitePatterns Zinc finger C2H2 type domain signature. 549 570 IPR013087 -
Vivi221g00002 1045 Gene3D SET domain 745 1045 IPR046341 -
Vivi221g00002 1045 SUPERFAMILY SET domain 745 1038 IPR046341 -
Vivi221g00002 1045 ProSiteProfiles Zinc finger C2H2 type domain profile. 615 643 IPR013087 -
Vivi221g00002 1045 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 737 1044 - -
Vivi221g00002 1045 SMART preset_2 753 877 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vivi221g00002 1045 SMART set_7 893 1031 IPR001214 GO:0005515
Vivi221g00002 1045 Pfam SET domain 904 1024 IPR001214 GO:0005515
Vivi221g00002 1045 Pfam Pre-SET motif 757 885 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vivi221g00002 1045 Gene3D Classic Zinc Finger 524 608 - -
Vivi221g00002 1045 Pfam Zinc finger C2H2-type, 3 repeats 583 686 IPR040689 -
Vivi221g00002 1045 ProSiteProfiles Pre-SET domain profile. 814 890 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vivi221g00002 1045 SMART c2h2final6 581 604 IPR013087 -
Vivi221g00002 1045 SMART c2h2final6 547 570 IPR013087 -
Vivi221g00002 1045 SMART c2h2final6 615 638 IPR013087 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi221g00002 576 659 C2H2 Transcription Factor Family AT2G23740 48.810 9.49e-20 94.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi221g00002 Pre-SET 1.8e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi221g00002 - - psat:127136654 1688.32