Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi219g00052 ATGAATGAGTATGGTTCATCTTCTTCTTCTCTGGTTTTGGATAGAGAAAGAGGAGAGCTTGTGGAATCATCTGTCAAACTGGAACGCAAAGGTGTTTCACCTGAGAGAAGTATTGAAGCTTTGAGGAATCATAGTGAAGCTGAGAGGAGAAGAAGAGCAAGAATTAATTCACATCTTGATACCCTTCGTACTGTTATTCCAGGTGCTAACAAGTTGGACAAAGCATCTTTACTAGCTGAAGTCATTACACATTTGAAAGAGCTAAAAACAAATGCAGCACAAGCAAGTGAAGGACTAATGATACCAAAAGACAATGATGAGATAAGAGTTGAATCACAAGAAGGTGGATTAAATGGTTTCCCTTATTCAATTAGAGCATCACTATGTTGTGAATACAAACCAGGTTTACTGTCTGATATAAGACAAGCACTTGATGAACTTCATCTTATGATAATAAGGGCAGAGATTGCAACTTTGGGCGGAAGAATGAAGAATGTCTTTGTCATAATTAGTTGCAAAGAACAGAATTTAGAAGATGCTGAGTATCGACAGTTTCTCGCTGGATCGGTTCATCAAGCTCTTAGGTCTGTTCTTGATAGGTTTTCTGTTTCACAAGATATCTTAGAAACTAGAAAGAGGAGGAGGATTTCTATATTCAGTTCTTCATCTTTTGGAGATTTCTTATAA 687 0.3712 MNEYGSSSSSLVLDRERGELVESSVKLERKGVSPERSIEALRNHSEAERRRRARINSHLDTLRTVIPGANKLDKASLLAEVITHLKELKTNAAQASEGLMIPKDNDEIRVESQEGGLNGFPYSIRASLCCEYKPGLLSDIRQALDELHLMIIRAEIATLGGRMKNVFVIISCKEQNLEDAEYRQFLAGSVHQALRSVLDRFSVSQDILETRKRRRISIFSSSSFGDFL 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi219g00052 228 PANTHER TRANSCRIPTION FACTOR BHLH30 6 220 IPR045847 GO:0003700|GO:0006355
Vivi219g00052 228 Gene3D - 35 97 IPR036638 GO:0046983
Vivi219g00052 228 SMART finulus 45 94 IPR011598 GO:0046983
Vivi219g00052 228 SUPERFAMILY ACT-like 127 204 IPR045865 -
Vivi219g00052 228 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 32 91 IPR036638 GO:0046983
Vivi219g00052 228 Pfam Helix-loop-helix DNA-binding domain 43 88 IPR011598 GO:0046983
Vivi219g00052 228 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 39 88 IPR011598 GO:0046983
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi219g00052 26 217 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 39.286 1.19e-31 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi219g00052 HLH 2.9e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi219g00052 - - lja:Lj3g3v2848980.1 381.333