Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi219g00017 ATGTTAGATCTTAATCTGAATGCTGAGTTGACTCAGAACGATGACTCGGTCATGCTACTGGAAAAAGTTCCACAAGCTTCTTCAGGAACTTCGAATTCGTCAATCGTGAATGCGGAGGGGTCGAGTAACATCACCGGAGATGAAGACTCGTGTTCAACGCGCGCCGGTGGTGTTTTCACCTTCCAGTTCGGTATACTTAAGGTGGAAAAAGGAACCGACGCTGTTGCGACGAAAGAGCTGTTTCCGGTGAGTGCGGGGAACTGGCCGCACGGGGAGAGTTCGGCGATGCTGATTCCGGCGAGGAAGAGCGTGATGGATCTTTCACTTGATCAACGTATTGGAGGTGAAAATGGAGTTGCTCAGGTTCCGCAACGGCCGCAGGTGAAGAAGAGTAGGAGAGGACCGAGGTCACGAAGCTCTCAGTACAGAGGAGTCACGTTCTACAGAAGAACTGGAAGATGGGAATCGCATATCTGGGATTGTGGGAAGCAAGTTTATTTGGGTGGATTTGACACTGCTCATGCTGCTGCTAGAGCTTATGATCGAGCTGCTATAAAGTTCAGAGGACTTGATGCTGACATTAATTTCAATCTAGTTGAGTATGAAGAAGATATGAATCAGATGAAGAATCTCTCAAAGGAGGAATTTGTGCACATACTACGTCGCCACAGTAATGGTTTCTCAAGGGGGAGTTCAAAATACAGAGGAGTAACACTTCACAAATGTGGTCGTTGGGAAGCTCGAATGGGACAACTCCTTGGAAAAAAGGCTTATGACAAGGCAGCTATCAAGTGTAATGGAAGAGAGGCTATGACAAACTTTGAGCCAAGTACATATGGAAGTGAGATCAAACCTGAAGCTATAAATGAAGGTGGCAGTCACAATCTTGACCTCAATTTAGGCATGGCAACTCCAGGGCATGAACCCAAAGAAAACAGAGGGTATCGTCAGTTTCAGACCACCCCTTACAACCTGCATCCTGGAAGGAATTTGAAGATGGAGACTAATGCTAATTCCGTTATTAGTGACCTGTCTTTGAAAAAGCTAGTTGCCACTGAACAGCGTCCTTCCATGTGGAATGCCACGTATTCTAGTTTCTTTCCCAATGAGGAAAGAGCAGAGAGAATCGGCATTGATCCTTCAAAAGGACCTCCCTACTGGGCATGGCAAGCACATAGTCAGGGCACTGCTTCCCCAGTACCACAATTCTCTACTGCAGCATCATCAGGATTCTCTATTTCAGCTACCTTTCCGCCAAATTCCATCTTTCAAACACAACCTATGAACTCGATTCCACTCCGTTTCCCTCCATCCATCGCACCTGGTAGCAATGCATCTCAATACTATTATCAGGTGAAGTCCTCCCAGGCACCACCGTAG 1380 0.4674 MLDLNLNAELTQNDDSVMLLEKVPQASSGTSNSSIVNAEGSSNITGDEDSCSTRAGGVFTFQFGILKVEKGTDAVATKELFPVSAGNWPHGESSAMLIPARKSVMDLSLDQRIGGENGVAQVPQRPQVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGLDADINFNLVEYEEDMNQMKNLSKEEFVHILRRHSNGFSRGSSKYRGVTLHKCGRWEARMGQLLGKKAYDKAAIKCNGREAMTNFEPSTYGSEIKPEAINEGGSHNLDLNLGMATPGHEPKENRGYRQFQTTPYNLHPGRNLKMETNANSVISDLSLKKLVATEQRPSMWNATYSSFFPNEERAERIGIDPSKGPPYWAWQAHSQGTASPVPQFSTAASSGFSISATFPPNSIFQTQPMNSIPLRFPPSIAPGSNASQYYYQVKSSQAPP 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi219g00017 459 CDD AP2 232 277 IPR001471 GO:0003700|GO:0006355
Vivi219g00017 459 MobiDBLite consensus disorder prediction 115 142 - -
Vivi219g00017 459 FunFam AP2-like ethylene-responsive transcription factor 140 199 - -
Vivi219g00017 459 SUPERFAMILY DNA-binding domain 232 276 IPR016177 GO:0003677
Vivi219g00017 459 Pfam AP2 domain 141 189 IPR001471 GO:0003700|GO:0006355
Vivi219g00017 459 SMART rav1_2 233 281 IPR001471 GO:0003700|GO:0006355
Vivi219g00017 459 SMART rav1_2 141 203 IPR001471 GO:0003700|GO:0006355
Vivi219g00017 459 CDD AP2 141 196 IPR001471 GO:0003700|GO:0006355
Vivi219g00017 459 Gene3D AP2/ERF domain 140 199 IPR036955 GO:0003700|GO:0006355
Vivi219g00017 459 Gene3D AP2/ERF domain 232 276 IPR036955 GO:0003700|GO:0006355
Vivi219g00017 459 ProSiteProfiles AP2/ERF domain profile. 141 197 IPR001471 GO:0003700|GO:0006355
Vivi219g00017 459 SUPERFAMILY DNA-binding domain 140 197 IPR016177 GO:0003677
Vivi219g00017 459 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 109 352 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi219g00017 1 459 AP2-EREBP Transcription Factor Family AT5G60120 44.689 8.59e-98 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vivi219g00017 AP2 2.3e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi219g00017 K09284 - gmx:100777102 673.7