Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi219g00016 ATGTTAGATCTTAATCTGAATGCTGAGTTGACTCAGAACGATGACTCGGTCATGCTACTGGAAAAAGTTCCACAAGCTTCTTCAGGAACTTCGAATTCGTCAATCGTGAATGCGGAGGGGTCGAGTAACATCACCGGAGATGAAGACTCGTGTTCAACGCGCGCCGGTGGTGTTTTCACCTTCCAGTTCGGTATACTTAAGGTGGAAAAAGGAACCGACGCTGTTGCGACGAAAGAGCTGTTTCCGGTGAGTGCGGGGAACTGGCCGCACGGGGAGAGTTCGGCGATGCTGATTCCGGCGAGGAAGAGCGTGATGGATCTTTCACTTGATCAACGTATTGGAGGTGAAAATGGAGTTGCTCAGGTTCCGCAACGGCCGCAGGTGAAGAAGAGTAGGAGAGGACCGAGGTCACGAAGCTCTCAGTACAGAGGAGTCACGTTCTACAGAAGAACTGGAAGATGGGAATCGCATATCTGGGATTGTGGGAAGCAAGTTTATTTGGGTGGATTTGACACTGCTCATGCTGCTGCTAGAGCTTATGATCGAGCTGCTATAAAGTTCAGAGGACTTGATGCTGACATTAATTTCAATCTAGTTGAGTATGAAGAAGATATGAATCAGATGAAGAATCTCTCAAAGGAGGAATTTGTGCACATACTACGTCGCCACAGTAATGGTTTCTCAAGGGGGAGTTCAAAATACAGAGGAGTAACACTTCACAAATGTGGTCGTTGGGAAGCTCGAATGGGACAACTCCTTGGAAAAAAGTATGTATATCTTGGGCTATTCGACAGCGAAGTAGAAGCTGCAAGGGCTTATGACAAGGCAGCTATCAAGTGTAATGGAAGAGAGGCTATGACAAACTTTGAGCCAAGTACATATGGAAGTGAGATCAAACCTGAAGCTATAAATGAAGGTGGCAGTCACAATCTTGACCTCAATTTAGGCATGGCAACTCCAGGGCATGAACCCAAAGAAAACAGAGGGTATCGTCAGTTTCAGACCACCCCTTACAACCTGCATCCTGGAAGGAATTTGAAGATGGAGACTAATGCTAATTCCGTTATTAGTGACCTGTCTTTGAAAAAGCTAGTTGCCACTGAACAGCGTCCTTCCATGTGGAATGCCACGTATTCTAGTTTCTTTCCCAATGAGGAAAGAGCAGAGAGAATCGGCATTGATCCTTCAAAAGGACCTCCCTACTGGGCATGGCAAGCACATAGTCAGGGCACTGCTTCCCCAGTACCACAATTCTCTACTGCAGCATCATCAGGATTCTCTATTTCAGCTACCTTTCCGCCAAATTCCATCTTTCAAACACAACCTATGAACTCGATTCCACTCCGTTTCCCTCCATCCATCGCACCTGGTAGCAATGCATCTCAATACTATTATCAGGTGAAGTCCTCCCAGGCACCACCGTAG 1425 0.4667 MLDLNLNAELTQNDDSVMLLEKVPQASSGTSNSSIVNAEGSSNITGDEDSCSTRAGGVFTFQFGILKVEKGTDAVATKELFPVSAGNWPHGESSAMLIPARKSVMDLSLDQRIGGENGVAQVPQRPQVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGLDADINFNLVEYEEDMNQMKNLSKEEFVHILRRHSNGFSRGSSKYRGVTLHKCGRWEARMGQLLGKKYVYLGLFDSEVEAARAYDKAAIKCNGREAMTNFEPSTYGSEIKPEAINEGGSHNLDLNLGMATPGHEPKENRGYRQFQTTPYNLHPGRNLKMETNANSVISDLSLKKLVATEQRPSMWNATYSSFFPNEERAERIGIDPSKGPPYWAWQAHSQGTASPVPQFSTAASSGFSISATFPPNSIFQTQPMNSIPLRFPPSIAPGSNASQYYYQVKSSQAPP 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi219g00016 474 MobiDBLite consensus disorder prediction 115 142 - -
Vivi219g00016 474 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 109 367 - -
Vivi219g00016 474 PRINTS Ethylene responsive element binding protein signature 272 292 IPR001471 GO:0003700|GO:0006355
Vivi219g00016 474 PRINTS Ethylene responsive element binding protein signature 234 245 IPR001471 GO:0003700|GO:0006355
Vivi219g00016 474 FunFam AP2-like ethylene-responsive transcription factor 140 199 - -
Vivi219g00016 474 CDD AP2 141 196 IPR001471 GO:0003700|GO:0006355
Vivi219g00016 474 Gene3D AP2/ERF domain 140 199 IPR036955 GO:0003700|GO:0006355
Vivi219g00016 474 Gene3D AP2/ERF domain 232 291 IPR036955 GO:0003700|GO:0006355
Vivi219g00016 474 SUPERFAMILY DNA-binding domain 140 197 IPR016177 GO:0003677
Vivi219g00016 474 ProSiteProfiles AP2/ERF domain profile. 141 197 IPR001471 GO:0003700|GO:0006355
Vivi219g00016 474 SUPERFAMILY DNA-binding domain 232 291 IPR016177 GO:0003677
Vivi219g00016 474 FunFam AP2-like ethylene-responsive transcription factor 232 292 - -
Vivi219g00016 474 Pfam AP2 domain 141 189 IPR001471 GO:0003700|GO:0006355
Vivi219g00016 474 Pfam AP2 domain 232 282 IPR001471 GO:0003700|GO:0006355
Vivi219g00016 474 CDD AP2 232 292 IPR001471 GO:0003700|GO:0006355
Vivi219g00016 474 SMART rav1_2 141 203 IPR001471 GO:0003700|GO:0006355
Vivi219g00016 474 SMART rav1_2 233 296 IPR001471 GO:0003700|GO:0006355
Vivi219g00016 474 ProSiteProfiles AP2/ERF domain profile. 233 290 IPR001471 GO:0003700|GO:0006355
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi219g00016 1 474 AP2-EREBP Transcription Factor Family AT5G60120 43.385 6.52e-94 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Vivi219g00016 AP2 1.5e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi219g00016 K09284 - gmx:100777102 712.22