Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi216g00006 ATGTTGATGGTGGCGAAGGAAGACAACGAAAGCTGCGGCAGCGGAGTGCACCACCGCACGTCGTCCACGTCATCGGCTCCGTCGCAGAGTCGGCAGCATCGCCAGAAACTCGAAGTGTACGATGAGATTCTTCGCCGGCTCATTTCAACCGGTAACGAAGAAGCTTTGCAGCCTGGATTTAACGATCAGCTTTGGGCTCATTTCAACCGTCTTCCTACACGGTATGCGTTAGATGTGAATGTAGAAAGGGCAGAAGATGTTCTTATGCACAAGAGATTACTTCATTTAGCGCATGATCCTGCTAATAGGCCTTCAATTGAAGTTCACTTAGTCCAGCTTCATCCCTCATCTGATGAAAACCCAGCTGACTCTTTCCAATCAAATGCTCCTAGGGTAGATTCTGGTCAAAGCTCTCCTAAATATTCAAGCAGGCAGGGTATATTCCCACCTCCTGCTTTTGGTTCTTCTCCTAATCTTGAAGCACTGGCTCTTGAAGAAAATGATTCTGAAGACTCGGAAGAGGAACGATATGTACATGCAAGTGTACAATATTCACGGCCCATGCATGAAATCACTATCTCAACAGATGACAAGCCAAAGCTTCTCAGCCAGTTAACTGCTTTGCTTGCTGAGGTTGGACTGAACATCCAAGAAGCACATGCTTTTTCCACAACTGATGGTTACTCGTTAGATGTGTTTGTTGTTGAAGGCTGGCCCTATGAGGAAACAGAGAAGCTAAAAGCAACTTTGGAAAAGGAAGTCTTGAAGATTGAGAGACATGAGAGGTCCAGGCGGCAATCAATATCATTTGTTGATGAGTGTGATCAAGCAAGGATGAACAATGAGCTGGATCATTTGAATATTCCAAATGATGGGACAGATGTTTGGGAAATAGATCCCAAACATTTGAAATATGGAACTCAAATTGCATCTGCGTCATACGGTGAACTATTTAAAGGTACATATTGTAGCCAGGAAGTAGCCATCAAAGTTCTCAAGACTGAACATGTAAGTACAGAAATGCAGAAAGAGTTTGCTCAAGAAGTCTACATCATGAGAAAGGTTCGACACAAGAATGTTGTGCAATTCATGGGCGCATGTACCAAGCCCCCAGGCTTATGCATAGTTACAGAGTTTATGTCTGGTGGAAGTGTATATGACTACTTACATAAGCATAAAGGGTGTTTTAAATTTCCTACCCTGCTCAAAGTTGCAATTGATGTTTCTAAAGGAATGAGCTACTTGCACCAACATAACATAATCCACAGAGACTTGAAATCTGCCAATCTTTTGATGGATGAAAATGGTGTTGTAAAGGTTGCCGATTTCGGAGTTGCTAGAGTGAAAGTTCAATCTGGGGTTATGACAGCGGAAACTGGGACTTATCGTTGGATGGCTCCTGAGGTTATTGAACACAAGCCATATGATCACAAGGCTGATGTATTTAGTTTTGGAATTGTTTTATGGGAGTTGCTCACTGGAAAGCTTCCATACGAATATTTGACCCCTCTACAGGCAGCCATAGGAGTTGTTCAGAAGGGTAAACGGCCCGCCATCCCCAAGAGTGCTCATCCAAAGTTTGTTCAGATTCTTGAGAAGTCTTGGCAGCAAGATCCAACATTAAGACCCGATTTCTCTGAAATCACTGAGCTCTTGCAGCAGTTAGCTAAGGAGGTTGGAGATGAAGGAGAGCGCCGGGATAGATCGGGAGGATTTCTGTCTGTCCTCAGACGAGGTCATCACTAA 1746 0.4393 MLMVAKEDNESCGSGVHHRTSSTSSAPSQSRQHRQKLEVYDEILRRLISTGNEEALQPGFNDQLWAHFNRLPTRYALDVNVERAEDVLMHKRLLHLAHDPANRPSIEVHLVQLHPSSDENPADSFQSNAPRVDSGQSSPKYSSRQGIFPPPAFGSSPNLEALALEENDSEDSEEERYVHASVQYSRPMHEITISTDDKPKLLSQLTALLAEVGLNIQEAHAFSTTDGYSLDVFVVEGWPYEETEKLKATLEKEVLKIERHERSRRQSISFVDECDQARMNNELDHLNIPNDGTDVWEIDPKHLKYGTQIASASYGELFKGTYCSQEVAIKVLKTEHVSTEMQKEFAQEVYIMRKVRHKNVVQFMGACTKPPGLCIVTEFMSGGSVYDYLHKHKGCFKFPTLLKVAIDVSKGMSYLHQHNIIHRDLKSANLLMDENGVVKVADFGVARVKVQSGVMTAETGTYRWMAPEVIEHKPYDHKADVFSFGIVLWELLTGKLPYEYLTPLQAAIGVVQKGKRPAIPKSAHPKFVQILEKSWQQDPTLRPDFSEITELLQQLAKEVGDEGERRDRSGGFLSVLRRGHH 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi216g00006 581 ProSitePatterns Serine/Threonine protein kinases active-site signature. 420 432 IPR008271 GO:0004672|GO:0006468
Vivi216g00006 581 Coils Coil 240 260 - -
Vivi216g00006 581 SMART serkin_6 303 556 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi216g00006 581 CDD ACT_TyrKc 188 255 - -
Vivi216g00006 581 MobiDBLite consensus disorder prediction 117 144 - -
Vivi216g00006 581 SUPERFAMILY ACT-like 188 252 IPR045865 -
Vivi216g00006 581 MobiDBLite consensus disorder prediction 115 156 - -
Vivi216g00006 581 FunFam Serine/threonine-protein kinase isoform 1 293 381 - -
Vivi216g00006 581 CDD STKc_MAP3K-like 309 552 - -
Vivi216g00006 581 Gene3D Transferase(Phosphotransferase) domain 1 382 569 - -
Vivi216g00006 581 Pfam Protein tyrosine and serine/threonine kinase 303 552 IPR001245 GO:0004672|GO:0006468
Vivi216g00006 581 ProSiteProfiles Protein kinase domain profile. 303 556 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi216g00006 581 SUPERFAMILY Protein kinase-like (PK-like) 293 555 IPR011009 -
Vivi216g00006 581 MobiDBLite consensus disorder prediction 559 581 - -
Vivi216g00006 581 Gene3D - 187 261 - -
Vivi216g00006 581 ProSiteProfiles ACT domain profile. 190 265 IPR002912 -
Vivi216g00006 581 Gene3D Phosphorylase Kinase; domain 1 293 381 - -
Vivi216g00006 581 PRINTS Tyrosine kinase catalytic domain signature 377 390 IPR001245 GO:0004672|GO:0006468
Vivi216g00006 581 PRINTS Tyrosine kinase catalytic domain signature 523 545 IPR001245 GO:0004672|GO:0006468
Vivi216g00006 581 PRINTS Tyrosine kinase catalytic domain signature 460 470 IPR001245 GO:0004672|GO:0006468
Vivi216g00006 581 PRINTS Tyrosine kinase catalytic domain signature 414 432 IPR001245 GO:0004672|GO:0006468
Vivi216g00006 581 PRINTS Tyrosine kinase catalytic domain signature 479 501 IPR001245 GO:0004672|GO:0006468
Vivi216g00006 581 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 100 560 - -
Vivi216g00006 581 MobiDBLite consensus disorder prediction 1 35 - -
Vivi216g00006 581 MobiDBLite consensus disorder prediction 15 33 - -
Vivi216g00006 581 MobiDBLite consensus disorder prediction 559 574 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi216g00006 2 580 MAP Kinase Kinase Kinase AT4G35780 63.167 0.0 740
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Vivi216g00006 PK_Tyr_Ser-Thr 1e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi216g00006 - - gmx:100805180 944.495