Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi216g00002 ATGGACGAGAACGACGATACAGTCACATATACGGTGAAAGTTACCGTTACCGTCACCATCACAGACCCTGACGAACTCCTTCCTGATGAAGGTTCAGCTAAGGGCAACGATGAAGGAAATGAGCCGGTGGAAAAGGATGGAGGAAAGGAACCGGTGGAGAAGGAAGGAGAAACGAGGAAACTCGATGACGTGGCACCACCTGGAGTACCTTCTTCTTCTTTTTCTTATACTCCAGTGTTGTTAAGCAAAGAGAAGAACAGGAGACTTGGTAGAAAAAGAAAGTCAGAGAGTGATGTTTCAAGGAATACTCGAAACAAGAAAGTTACATGCAGTGAAGGAGACTCATTAATGTGCCATCAATGCCAGAGAAATGATAAGGGTAGAGTTGTCAGATGCACTAAATGCAAACGGAGAAGATTTTGCATTCCATGTTTAACTAATTGGTATCCTAATTTGAAAGAGACTGATGTTGCTGAAGCGTGTCCTGTGTGCTGTGATAATTGCAACTGTAAAGCGTGCTTGCGATCCTTTAAACTTATCAATGAAATGAAGCAAAGGGTTGAAACCAACACCAAGGAAGAGGAGGTTGAGTTCTCTAAGTATATGCTTAAAGGGGTTCTTCCGTATTTAAGACAGTTGGATCAAGAACAGATGATTGAGAAGGAAAGAGAAGCTAAGAGACAAGGGCTCTCATTCTCAAAGCTTGAAGTAAAAGAGGGAGATTATTTTAAAGATGAGCGAGTGTACTGTGACAACTGCAAAACATCAATATTTGACTACCATAGAAGCTGTACAAAATGCCCTTTTGACATTTGTCTCCTCTGTTGCCGCGAGCTTCGTGATGGGAAGCTTCTTGGTGGTGCAGATCCAATTGAGTTTAATTTTATCTTCAGAGGGCGTAATTATCTGCATGGTGGAAATGATGATAGAATTGTCAAAGAAAAAAAGCCTCGTGATGCTGCCGAGCCTGAGATTCGTGAGTGGTCAAGATCTAGGTGGCATGCGAATGCTGATGGTAGCATTCCCTGTCCAAAAGCCGATAATGAATGTGATCATGGTTTCCTTGAACTGAGAAGGATACTTCCTCCAAATTGCATCTCCGAGTTAGTATGTAAAGCCGAAAAACTTACAGAAACATTTGAGCTTCACGTTGCAAAGGATACCCTTGATAATAGGTGTACGTGCTGGAAGTCTGTTAGGAGCGCAGATGGTTTATACAGTAACCTAAGGAAAGCAGCTTTTCGTAAAGATTCCAGTGACAACTTTTTGTACTGTCCTAGGGCTGTGGGTCTACATCAGGAAGATTTAAGGCATTTTCAATGGCACTGGAGCAAAGGGGAGCCTGTAATTGTCAGCAATGTACTTGAATGTACATCTGGTTTAAGCTGGGAACCACTAGTCATGTGGCGTGCATTTCGTCAAATATCCAATTCCAAGTTTGATGTACTTTTGGATGTGAAGACAGTTAATTGCTTAGATTGGTGCGAGGGAGATATTAACATCCACAAGTTCTTTACTGGGTACACAAATGGTCGCAATGACTGGCTTAATTGGCCTGAGATGTTGAAATTGAAAGATTGGCCTCCTTTTGATTTATTTCAGGAACTTTTACCTCGTCATCATGCCGAGTTCATATCTTCCTTGCCTTTTAAAGAATATACAGATCCTTTTATGGGGGCTCTCAACCTTTATGTGAAATTGCCGGATCACTGTGTAAAGCCAGACATGGGGCCAAGAACATATGTTGCTTATGGATATGCTCAGGAGCTTGGACGTGGTGATTCCGTGACTAAGCTCCACTGTGATGTGTCTGATGCTGTAAATGTGTTGACTCATATTGCTAAAGTGGAACCAAAACCTGAGGAAACCACAGCCATTGAGAAATTGAGACGTAAGCACCTCGAGCAAGATAAGAGGGAGCTATATGGTTATGAGAAAGTAACAGTGAAACAACAAAATGGTTTGTTGGTTGGAGAGGATTCTTTAGATGGCGCTCTCTGGGATATTTTTCGGAGAGAGGATGTACCCAAATTGGAGGAATATCTAAAGAAGCATTTCAGAGAGTTCAGACATGTCCACTGTGATCCTTTAAAGCAGGTTATTCACCCTATTCATGATCAAACCATTTATCTGACTACGGAGCATAAGAGCAAACTTAAGGAGGAGTATGGAATTGAGCCTTGGACTTTTGTTCAGAAGCTAGGAGATGCTGTTCTTATTCCTGCGGGTTTACCTCACCAAGTTAGAAATCTGAAGTCTTGCTTCAAGGTTGTACATGATTTTGTCTCTCCTGAACATGTTGGTGAGTGCATCCGTTTGACAGAGGAATTCCGCAAGCTTCCGATAAATCACAGAGCCTCCGAGGACAAGTTTGAGGTGAAGAAAATTATCATCCATGCTATGCGTGACGTGGTTGAAAAATTAGAGAAAGCAAGGTCTGGGTAA 2445 0.4209 MDENDDTVTYTVKVTVTVTITDPDELLPDEGSAKGNDEGNEPVEKDGGKEPVEKEGETRKLDDVAPPGVPSSSFSYTPVLLSKEKNRRLGRKRKSESDVSRNTRNKKVTCSEGDSLMCHQCQRNDKGRVVRCTKCKRRRFCIPCLTNWYPNLKETDVAEACPVCCDNCNCKACLRSFKLINEMKQRVETNTKEEEVEFSKYMLKGVLPYLRQLDQEQMIEKEREAKRQGLSFSKLEVKEGDYFKDERVYCDNCKTSIFDYHRSCTKCPFDICLLCCRELRDGKLLGGADPIEFNFIFRGRNYLHGGNDDRIVKEKKPRDAAEPEIREWSRSRWHANADGSIPCPKADNECDHGFLELRRILPPNCISELVCKAEKLTETFELHVAKDTLDNRCTCWKSVRSADGLYSNLRKAAFRKDSSDNFLYCPRAVGLHQEDLRHFQWHWSKGEPVIVSNVLECTSGLSWEPLVMWRAFRQISNSKFDVLLDVKTVNCLDWCEGDINIHKFFTGYTNGRNDWLNWPEMLKLKDWPPFDLFQELLPRHHAEFISSLPFKEYTDPFMGALNLYVKLPDHCVKPDMGPRTYVAYGYAQELGRGDSVTKLHCDVSDAVNVLTHIAKVEPKPEETTAIEKLRRKHLEQDKRELYGYEKVTVKQQNGLLVGEDSLDGALWDIFRREDVPKLEEYLKKHFREFRHVHCDPLKQVIHPIHDQTIYLTTEHKSKLKEEYGIEPWTFVQKLGDAVLIPAGLPHQVRNLKSCFKVVHDFVSPEHVGECIRLTEEFRKLPINHRASEDKFEVKKIIIHAMRDVVEKLEKARSG 814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi216g00002 814 SMART cupin_9 537 778 IPR003347 -
Vivi216g00002 814 SUPERFAMILY Clavaminate synthase-like 433 809 - -
Vivi216g00002 814 ProSiteProfiles Zinc finger RING-type profile. 118 164 IPR001841 -
Vivi216g00002 814 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 56 812 IPR045109 GO:0032454|GO:0033169
Vivi216g00002 814 MobiDBLite consensus disorder prediction 27 62 - -
Vivi216g00002 814 MobiDBLite consensus disorder prediction 91 105 - -
Vivi216g00002 814 FunFam Transcription factor jumonji domain-containing protein 420 787 - -
Vivi216g00002 814 Pfam JmjC domain, hydroxylase 664 761 IPR003347 -
Vivi216g00002 814 MobiDBLite consensus disorder prediction 16 105 - -
Vivi216g00002 814 Gene3D Cupin 425 787 - -
Vivi216g00002 814 ProSiteProfiles JmjC domain profile. 556 778 IPR003347 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vivi216g00002 JmjC 2.7e-12 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi216g00002 K15601 - gmx:100780803 1019.61