Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi216g00001 ATGGCGGGAGAAGAGAACGACTCAGTCACATATACAGTGAAAGTCACAGTCACTGTCACCATCACAGACGAACCAGTGTCTGATCGATCAAAGGAGTCGGTGGAGAAGAAGGACGAAGAATCAACAATACGTGATGACGTGGCACCAGGAGTCTCTTCCTCTTCTGTTCAAGTTGCTTCGCGTGGTGGAAGTAGTAGGAAAAGAAAGGTCTTATGCGATTCTGAAGAAAGCGAAGCTTCACAAGAGAACGATGAAGGTTCGTTTGCAAGTGATGACGTGGCAACGGTAACTGAACCTATGAATCGTGGCACTGAAACGGCCTCGTTGACGGATAATGAAGATTCTGTTGACGGTTATGATATGGAAGCTGGTGATTCATCTTCTGTTAAATTTGCCGGGAGGACAATGGAGGTCTGCCGGAGAAAGAAACGCGGAAGAACGAACAATGCGGAAATCGAGAATGAGGAAGAAACTGATGAAGACGATGACGTGGCAGACGGAGGCACTTCATCTTTTCAACTGGAGAGAGAAAATGTGAAGAGAGAGAAGAAGAAATCTGGTAGAAAAAGGAAGACTGATTCTAGTTCTGAAGAAAATGGTGAAGCTTCAGAAAAGGGGGAAGATTGTGATTTTGTTAGGGAAGAGAAGAAAACACCTGGTGGAAAAATTCAAATCGAAGAGAATGAACTGGTCTCTGAAAAGAAGTCTGAGAGTGCTCTGTTGAAGGACAGGAATCAGGACTGTCCGGAAATTGAAACTGAAACGCCTTTGTATAAAGATAATGAATGTTATCCTTTACGAAAAACTAGAAACAAGAAGCCTGCATTAGTTGAACATGCGGTGCCAAAATTCAACAAGAGAAATCCTAAGTGGATTGAAGAGGAGTCCTTAATGTGCCATCAATGTCAGAGAAATGATAGGGGCAGGGTTGTCAGATGCACTAGCTGCAAACGGAAAAGGTTTTGCATACCCTGTATAACTAATTGGTATCCTAACTGGAAAGAGGACAAAATTGCTGAGGAATGCCCGGTGTGCTGTGGTAATTGCAATTGCAAAACATGCTTGCGATCAAGTGTACTTCTCAATGAAACTAAACACAAGACAGAAACCGACAGAGATTATGGGGTTGGTCTCTCCAAGTATATGCTGAAAGAACTTCTTCCGCATTTGAGACGATTGGATGAGGAACAAATGGTCGAGAAGGAGATAGAAGCGAAAACACAAGGGCTCCCACTTTCTGAGCTAACAATAAAAGTAGCAGATTACTCTAAAGATGAGCGTGTGTACTGTGATAACTGCAAAACATCAATATTTGACTACCACAGAAGCTGCACAAAATGTTCTTTTGTCCTTTGTCTCCTCTGTTGCTGTGAGCTTCGTGGCGGGCAACTTCTAGCCGGTGCAGATCCTATTGAGTTTGAGTTTATCTTCCGAGGACGTGATTATTTGCATGGTGGAGATGAAGAGAAACAAGTCAGAAAAAAAAAACCTCGTTCTGCAGTCCAGCCTGAGATTCATCAATGGTCAAAATCTGGGTGGCATGCAGATACTGACGGTAGCATTCCATGTCCAAAAGCAGATAATGAATGTGATCATGGTTTCCTTGAAATGAGAAGGATACTTCCTCCAAATTGTATCTCCAAGTTAGTATGTAAAGCAGAAAAACTTGAAGAAAAAATTGAGCTTCACGATGCGGAGGAGACTCTTGATAATAGGTGTTCATGTTGGAAGTCTGTTAGGAGCGCAGATGGTACCTACAGTAACCTAAGGAAAGCAGCTTTTCGTAAAGATTCTAGTGACAACTTTTTATACTGTCCTAGGGCTGTAGATCTACATCATGAAGATTTAAAACATTTTCAGTGGCATTGGAGCAAAGGGGAGCCTGTAATTGTCAGTAATGTACTCGAATGCTCATCTGGTTTAAGCTGGGAACCACTTGTCATGTGGCGTGCATTCCGTCAGATAAGAAATACCAAGCACAAACCAGTTTTGGATGTGAAGGCAATTGATTGCTTAGATTGGTGCGAGGGAGATATTAATTGCCACCAATTCTTTACTGGGTACAAAGAGGGTCGCAAGGATTGGCTGAAATGGCCTCAGATTTTGAAATTGAAAGATTGGCCTCCTTCTAATTTATTTGAAGAAAGTTTGCCTCGTCATTGTGCCGAGTTCATATATTCTTTGCCGTATAAAGATTATACAGATCCTTTCAAAGGTGCTCTTAACCTTGCTGTGAAGTTGCCTGAAGGTGTTCTAAAGCCAGACATGGGCCCAAAAACATACATTGCTTATGGATTTGCTCAGGAGCTTGGACGCGGTGACTCTGTGACTAAGCTCCATTGTAATATGTCTGATACAGTAAATGTGTTGACTCATATTGCTAAAGTTGAAATGGAACCTGAGATCATTAGTGCCATCAAGAAACTGACACAAAAACACCTGAAGCAAGACAAAAGGGAGCTACATCTACATGGTAATAATCAGGATGGACTAACCAATGTTAGCATTCTTGATAATTCATCGTCTTCCAGAAATGCATCAGACGGGCAAAATAGAGTTCGAGTCATGGATAATGAAAATGGATTATGCAAGGAGAAGGTGGTTGATCCTGTTCATCAACACTCAGGCGCACATAATGATGGCTTTTCTTCTGGATCAAAGCTCAAAGAGGTTGATAAAGTGATTCTGAAAAAAGATAATAGATTGTTGGTTGGAGATGATTCTTTAGATGGTGCTCTCTGGGATATTTTTCGGAGAGAGGATGTACCTAAATTGGAGGAATATCTAAAGAAGCATTTTAGAGAGTTTAGGCATGTCCATTGCTCTCCTTTAAAGAAGGTTATTCACCCCATCCATGATCAGACCTTTTATTTGACTCTGGAGCATAAGAGGAAACTCAAAGAGGAGTATGGAATCGAGCCTTGGACTTTTACTCAGAAGTTAGGAGATGCTGTTCTCGTTCCTGCCGGCTGTCCTCACCAAGTCAGGAATCTCAAGTCATGCATCAAGGTTGGACTTGATTTTGTCTCGCCTGAAAATGTTGGTGAATGCTTCCGTTTGACAAAGGAATTTCGTAAGCTTCCGATAAACCACAGATCCAATGAGGACAAGTTGGAGGTGAAGAAAATGACTATATATGCTATGCTTGATGTGATTGATCAATTGGAGGAAACAAGGTAA 3180 0.4176 MAGEENDSVTYTVKVTVTVTITDEPVSDRSKESVEKKDEESTIRDDVAPGVSSSSVQVASRGGSSRKRKVLCDSEESEASQENDEGSFASDDVATVTEPMNRGTETASLTDNEDSVDGYDMEAGDSSSVKFAGRTMEVCRRKKRGRTNNAEIENEEETDEDDDVADGGTSSFQLERENVKREKKKSGRKRKTDSSSEENGEASEKGEDCDFVREEKKTPGGKIQIEENELVSEKKSESALLKDRNQDCPEIETETPLYKDNECYPLRKTRNKKPALVEHAVPKFNKRNPKWIEEESLMCHQCQRNDRGRVVRCTSCKRKRFCIPCITNWYPNWKEDKIAEECPVCCGNCNCKTCLRSSVLLNETKHKTETDRDYGVGLSKYMLKELLPHLRRLDEEQMVEKEIEAKTQGLPLSELTIKVADYSKDERVYCDNCKTSIFDYHRSCTKCSFVLCLLCCCELRGGQLLAGADPIEFEFIFRGRDYLHGGDEEKQVRKKKPRSAVQPEIHQWSKSGWHADTDGSIPCPKADNECDHGFLEMRRILPPNCISKLVCKAEKLEEKIELHDAEETLDNRCSCWKSVRSADGTYSNLRKAAFRKDSSDNFLYCPRAVDLHHEDLKHFQWHWSKGEPVIVSNVLECSSGLSWEPLVMWRAFRQIRNTKHKPVLDVKAIDCLDWCEGDINCHQFFTGYKEGRKDWLKWPQILKLKDWPPSNLFEESLPRHCAEFIYSLPYKDYTDPFKGALNLAVKLPEGVLKPDMGPKTYIAYGFAQELGRGDSVTKLHCNMSDTVNVLTHIAKVEMEPEIISAIKKLTQKHLKQDKRELHLHGNNQDGLTNVSILDNSSSSRNASDGQNRVRVMDNENGLCKEKVVDPVHQHSGAHNDGFSSGSKLKEVDKVILKKDNRLLVGDDSLDGALWDIFRREDVPKLEEYLKKHFREFRHVHCSPLKKVIHPIHDQTFYLTLEHKRKLKEEYGIEPWTFTQKLGDAVLVPAGCPHQVRNLKSCIKVGLDFVSPENVGECFRLTKEFRKLPINHRSNEDKLEVKKMTIYAMLDVIDQLEETR 1059
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi216g00001 1059 MobiDBLite consensus disorder prediction 97 113 - -
Vivi216g00001 1059 SUPERFAMILY Clavaminate synthase-like 610 1043 - -
Vivi216g00001 1059 MobiDBLite consensus disorder prediction 47 62 - -
Vivi216g00001 1059 MobiDBLite consensus disorder prediction 135 152 - -
Vivi216g00001 1059 Gene3D Cupin 603 1034 - -
Vivi216g00001 1059 MobiDBLite consensus disorder prediction 189 235 - -
Vivi216g00001 1059 Pfam JmjC domain, hydroxylase 908 1008 IPR003347 -
Vivi216g00001 1059 ProSiteProfiles Zinc finger RING-type profile. 299 345 IPR001841 -
Vivi216g00001 1059 Coils Coil 546 566 - -
Vivi216g00001 1059 SMART cupin_9 717 1025 IPR003347 -
Vivi216g00001 1059 MobiDBLite consensus disorder prediction 25 45 - -
Vivi216g00001 1059 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 67 1058 IPR045109 GO:0032454|GO:0033169
Vivi216g00001 1059 MobiDBLite consensus disorder prediction 832 853 - -
Vivi216g00001 1059 ProSiteProfiles JmjC domain profile. 736 1025 IPR003347 -
Vivi216g00001 1059 MobiDBLite consensus disorder prediction 18 235 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vivi216g00001 JmjC 4.6e-13 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi216g00001 K15601 - gmx:100780803 1154.04