Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi214g00027 ATGGCAGAAACAAAAGAAGCATCAAGTTCGGAGATGTCTCTGAAAGATCAAGGAAACGAGTTTTTCAAGTCCGGCAAGTATCTCAAAGCTGCTGCACTCTACACTCAAGCCATCAAAAAAGACCCTTCAAATCCCACTCTTTATAGTAACCGTGCTGCAGCATTGCTGCAATTGGATAAGCTTAACAAAGCTCTCGATGATGCTGACATGACAATTAAATTAAAACCCCAATGGGAAAAGGGACATTTCCGGAGGGGATGCATATTGGAGGCCTTGAAACGATATGATGATGCATTAGCTTCCTTTCAGATCGCTTCGCAGTATAACCCACAAAGTCAAGAAGTATCAAAAAAGATAAAGAAGATAAACCAACTAGCGAAAGATAGCAAGCGAGCTCAAGAAGTGGAGAATATGAGATCAAATGTTGACATGGCCAAACATTTAGATACATTGAAACATGAATTGTCTGAAAAGTATGGATCTGAAGAAAGCTGGAAAGACAAGTTATCGTTCCTTGTTGAGACCATGGAAACTGCTGTAAAATCATGGCATGAAACTTCTTCAGTGGATGCTAGAGTTTACTTTCTTCCTGACAAAGAAAAGACACAGACCGATAAGTATCCCCCAATTGTGAACATTGATAAGGCCTTTGAAACACCAGAAACACACAGCAGCTGCTTTTCATTTCTTAGGCAGTATGCCGAGGAGTCTTTCTCCCAAGCAGCCTGCTTAGTGACTGCTAAAAACATCATTGCTTATCCGCAGGTCTGGAAAGGCCAAGGGTCAAGGAAATGGAAACATGCACAGAATGATGGTTTCTTTGTTCAACTCGAGTCTCCTTCGCTGAGAAAGTTGTGGTTTATTCCCAGTTCAAATGAAAAGGGACAGACACTGTGCAGGGATCCAGAAGTTTTGGACATTGGTTCTCATGAAGTTGTTCCTCGCTTGTTCAAAGAAAAGACGACCCGTGCTTAA 975 0.4164 MAETKEASSSEMSLKDQGNEFFKSGKYLKAAALYTQAIKKDPSNPTLYSNRAAALLQLDKLNKALDDADMTIKLKPQWEKGHFRRGCILEALKRYDDALASFQIASQYNPQSQEVSKKIKKINQLAKDSKRAQEVENMRSNVDMAKHLDTLKHELSEKYGSEESWKDKLSFLVETMETAVKSWHETSSVDARVYFLPDKEKTQTDKYPPIVNIDKAFETPETHSSCFSFLRQYAEESFSQAACLVTAKNIIAYPQVWKGQGSRKWKHAQNDGFFVQLESPSLRKLWFIPSSNEKGQTLCRDPEVLDIGSHEVVPRLFKEKTTRA 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi214g00027 324 PANTHER TPR REPEAT CONTAINING PROTEIN 1 319 - -
Vivi214g00027 324 SUPERFAMILY TPR-like 13 122 IPR011990 GO:0005515
Vivi214g00027 324 FunFam serine/threonine-protein phosphatase 5 10 124 - -
Vivi214g00027 324 Pfam TPR repeat 18 58 - -
Vivi214g00027 324 ProSiteProfiles TPR repeat profile. 11 44 IPR019734 GO:0005515
Vivi214g00027 324 Gene3D Tetratricopeptide repeat domain 11 125 IPR011990 GO:0005515
Vivi214g00027 324 SMART tpr_5 45 78 IPR019734 GO:0005515
Vivi214g00027 324 SMART tpr_5 11 44 IPR019734 GO:0005515
Vivi214g00027 324 SMART tpr_5 79 112 IPR019734 GO:0005515
Vivi214g00027 324 Pfam Tetratricopeptide repeat 80 111 IPR013105 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi214g00027 4 122 U-box Gene Family AT3G07370 26.891 4.10e-06 45.8