Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi212g00025 ATGACTGACTTGTCCCCCACAGCTGATAATCTCGGTCAATCCACCGCCGTCGATATAACCGGCAAGATCATGGTTGTTATCATTATAATTCTCTTCTTCTTTGTTGTTACTTTTCTTTTCTTCCATCTTTTCGCCAAGGGTTTCTGGTGGTCTCATGATAGCCAGGCCGATAACAATTCCCAATCCCGCCGCCGCCGCCGTGGTCAACAGGCTGCTGTTCTTGGAGAAGGAGGTCTGGATCCTTTGATACTAAACTCCCTTCCCGTAACGGTGTTCAATTCGGAAAAAGATGGTTTGGATTTGGAGTGTTCAGTTTGTCTTGCTGAACTAGTTGAAGGTGAAAAAGTGAGGGTTTTGCCGAAATGCAATCACAGGTTTCACATAGATTGTATTGATATGTGGTTCCAATCTCATTCAACCTGTCCCCTTTGCAGAACAACACTTGCCCCTACTACTCCTTCTTCACAAGTAGTAGAAATAGAACCATCATCCGCTGCTTTTCCTACAAATGTCTTGATTTGGGGAAACCACGATCAAACTGTCTCTTCTACTACTACTAGTTCGGAACAAAACACTTGTTCTTCATCTTCTTCCTCATCCGAGGGAACAAGTGATGATGGAATGTTGAGGATTGATATACCCAATGACAGTGAGGCAACTACTTCATCATCCTCGCCCACTGCAGGAGGAGGGAGATTGAGGTCGTTGAAGAGGCTTTTAAGCAACAGCAGACTAAATCCTTGGAGTCCAACTGCTGCTGCTGCCACTACATCTCTCCAACAACAAACAAAACCAAAGGAATCAGCAGCACAACACAGCTGA 822 0.4489 MTDLSPTADNLGQSTAVDITGKIMVVIIIILFFFVVTFLFFHLFAKGFWWSHDSQADNNSQSRRRRRGQQAAVLGEGGLDPLILNSLPVTVFNSEKDGLDLECSVCLAELVEGEKVRVLPKCNHRFHIDCIDMWFQSHSTCPLCRTTLAPTTPSSQVVEIEPSSAAFPTNVLIWGNHDQTVSSTTTSSEQNTCSSSSSSSEGTSDDGMLRIDIPNDSEATTSSSSPTAGGGRLRSLKRLLSNSRLNPWSPTAAAATTSLQQQTKPKESAAQHS 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi212g00025 273 ProSiteProfiles Zinc finger RING-type profile. 103 145 IPR001841 -
Vivi212g00025 273 MobiDBLite consensus disorder prediction 181 273 - -
Vivi212g00025 273 MobiDBLite consensus disorder prediction 239 273 - -
Vivi212g00025 273 CDD RING-H2_EL5-like 102 145 - -
Vivi212g00025 273 FunFam RING-H2 finger protein ATL3 70 150 - -
Vivi212g00025 273 MobiDBLite consensus disorder prediction 181 205 - -
Vivi212g00025 273 SMART ring_2 103 144 IPR001841 -
Vivi212g00025 273 MobiDBLite consensus disorder prediction 215 230 - -
Vivi212g00025 273 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 15 246 - -
Vivi212g00025 273 Pfam Ring finger domain 102 145 IPR001841 -
Vivi212g00025 273 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 151 IPR013083 -
Vivi212g00025 273 SUPERFAMILY RING/U-box 83 151 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi212g00025 21 246 C3H Transcription Factor Family AT1G53820 34.146 1.56e-40 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi212g00025 - - mtr:25499753 278.87