Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi212g00016 ATGAGCACCAACCACAACAATGGATCCCAGTTTGGGGACACTACGCTCACCAAAGTGTTCGTTGGAGGTCTTGCTTGGGAGACTCCCAAAGACACACTGAGAGAGCATTTTGAAAAGTACGGCGAAATCCTTGAAGCTGTTATCATTTCCGATAAGCTTACCGGCAGATCCAAAGGATACGGATTTGTGACGTTCAAGGAAGCAGAGGCGGCAAACAAGGCTTGCGAGGAACCGACTGTTATGATCAATGGCCGCCGAGCCAACTGTAATATCGCATCTCATGGTGCTCGCCGTCAAAGGTCTAATCCAGCCACTCCTCCTCTCTCTCCTCCACCTCTACCACCGCCTTACACACAAGGAACGAAGAACCGTGAGAGCCAGCCGGTTCAGTGGTATTATCCGGTGGGAACACCCACACCTGCACCTCCTTCTCCATTCTATCATCACGCCATTCCTTTTTACGGGTATACGCCCACCTACATTGCACCAGATCATATGAATTACAATTACTATAACAACTACAATTACAATTACAATTACAATCAGAAGGTGAACTATGGAATGGGTGGGGTGTATGTGTATCCGAGTCGGCAAGGTATTGTGCCAGTGATGCATCCTTTCTACAGAACAGAAACTATGGGTGTCCCTGCACCTCAAATCTTCCATTCACTACCACCTCATTATGCTCCTTCCATCACTCCTCCTCCTACTACAGGTCCAGTTGGCACGGGTGAATGCTTCAAAAGAGTGGTGGTATGA 759 0.4822 MSTNHNNGSQFGDTTLTKVFVGGLAWETPKDTLREHFEKYGEILEAVIISDKLTGRSKGYGFVTFKEAEAANKACEEPTVMINGRRANCNIASHGARRQRSNPATPPLSPPPLPPPYTQGTKNRESQPVQWYYPVGTPTPAPPSPFYHHAIPFYGYTPTYIAPDHMNYNYYNNYNYNYNYNQKVNYGMGGVYVYPSRQGIVPVMHPFYRTETMGVPAPQIFHSLPPHYAPSITPPPTTGPVGTGECFKRVVV 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi212g00016 252 SMART rrm1_1 18 90 IPR000504 GO:0003723
Vivi212g00016 252 SUPERFAMILY RNA-binding domain, RBD 16 178 IPR035979 GO:0003676
Vivi212g00016 252 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 17 106 IPR000504 GO:0003723
Vivi212g00016 252 PANTHER BOULE-RELATED 5 236 - -
Vivi212g00016 252 Gene3D - 2 104 IPR012677 -
Vivi212g00016 252 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 19 85 IPR000504 GO:0003723
Vivi212g00016 252 MobiDBLite consensus disorder prediction 104 118 - -
Vivi212g00016 252 MobiDBLite consensus disorder prediction 94 124 - -
Vivi212g00016 252 FunFam Putative RNA-binding protein ARP1 11 99 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi212g00016 13 93 C2H2 Transcription Factor Family AT2G19380 43.210 5.11e-16 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi212g00016 - - mtr:25499746 298.516