Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi212g00010 ATGAGCAGAAATCAAAGCAAAGTGAATTTGATGGAAGAAGTGAAAGGGTACTCTTCTGATAGAGGTGAAGAAGAAGAGGAAGATGAAGGTGCAGAAGAGATGATCACAATTACAGGAGAAGAAAGCAACAACAGCAGCAGGTTACAGACACAGACACATTTACAGACAGCAGCGCAACAAGAGGAAGAAGAAGATGAAGAAACGGTGGTTGGGAATTTGAATGAGAAGAATGAGGAGAGAAAGAAAGAAGAAGATTTGATGGAGTTGAGACTTGGAGGGAGTGGAAGCAAGAGCAAGAGCATGAGCAAGGAAGAAGGAATAGAGTGTTCGAATTCAAAGAACGAGGAAGAGGTAGAAGAAGAAGTCGAAAAAGAGCACATGTTTGACAAAGTAGTGACACCGAGTGACGTAGGGAAGCTGAATCGACTGGTGATACCGAAGCAACACGCAGAGAAGTACTTCCCTTTGGATTCTTCTACAAACGAGAAAGGGCTTCTTCTCAACTTTGAAGATCGGAATGGAAAAATGTGGCGATTCAGGTACTCGTATTGGAACAGTAGCCAGAGCTATGTGATGACAAAAGGATGGAGCCGTTTTGTTAAAGAGAAGAAGCTTGATGCAGGTGATATTGTTTCGTTTCACCGTGGCCGTGCTGAATCGCACAGACATAGATTGTACATAGATTATAGGCCAAGGTCACATACTCACTCTCCTTACTCTCAGCATCATCATCACCACCACCACCTCATGCCGCAGTATCCTCCTAACATCGCCACATTGCCTTTTTATCTTCCCAATCATCACTTCTCATCATGCGGCGGTGTTGGTGTGGGTGCTAGATCATTGTACAACTCCTCTCAATATTCACCTCATCTTCCAAATTACTCACCGGCGGCAGCTGCTTCTTCTCCAATACTGCCTCCTCAATATTTCAACAACAATTTCTATACTACACTCCATCAACACCACCAACAACAACAGTACCATTCTTCTGCTGCTGATCACCTTGTTAATAATAATATGAATCCTCTCTTTTACCTCACTTCCTCGCCTATGACGCCGCCGACATCAACAATGGGTGGTGGTGGAGGTGGAGGTGGGGATATTCAACACTTGCCGGGGCCGGGGTCTTGGCAAGGTCAATACCAAGATCAGAGAAATGTAAATGTGAATCTCCCCATGAACATGATAATTGATTCTGTGCCAGTTACACAGCACCACCGCAGCGGGAATCCCACCAGTAATAATAATAGCAGCGGAAAACGGCTGAGGCTATTTGGGGTCAACATGGAATGTGACTCTTCTTCATCATCCTCATCAGCACCACCAAATGTGACTATGGCTAATCAATCACATTCACCCTCTTCAACAACAACGACGACAACAACATCGGGTGGAGATCATCACCGAGGGAGACTTTCGCAGCTCTTTGATTTGGAACCCTTCAATTATCGCCGCCACTGA 1464 0.4501 MSRNQSKVNLMEEVKGYSSDRGEEEEEDEGAEEMITITGEESNNSSRLQTQTHLQTAAQQEEEEDEETVVGNLNEKNEERKKEEDLMELRLGGSGSKSKSMSKEEGIECSNSKNEEEVEEEVEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSTNEKGLLLNFEDRNGKMWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFHRGRAESHRHRLYIDYRPRSHTHSPYSQHHHHHHHLMPQYPPNIATLPFYLPNHHFSSCGGVGVGARSLYNSSQYSPHLPNYSPAAAASSPILPPQYFNNNFYTTLHQHHQQQQYHSSAADHLVNNNMNPLFYLTSSPMTPPTSTMGGGGGGGGDIQHLPGPGSWQGQYQDQRNVNVNLPMNMIIDSVPVTQHHRSGNPTSNNNSSGKRLRLFGVNMECDSSSSSSSAPPNVTMANQSHSPSSTTTTTTTSGGDHHRGRLSQLFDLEPFNYRRH 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi212g00010 487 MobiDBLite consensus disorder prediction 471 487 - -
Vivi212g00010 487 ProSiteProfiles B3 DNA-binding domain profile. 128 233 IPR003340 GO:0003677
Vivi212g00010 487 MobiDBLite consensus disorder prediction 101 115 - -
Vivi212g00010 487 Gene3D - 122 248 IPR015300 -
Vivi212g00010 487 FunFam B3 domain-containing protein 121 245 - -
Vivi212g00010 487 SUPERFAMILY DNA-binding pseudobarrel domain 125 220 IPR015300 -
Vivi212g00010 487 MobiDBLite consensus disorder prediction 353 382 - -
Vivi212g00010 487 MobiDBLite consensus disorder prediction 431 469 - -
Vivi212g00010 487 MobiDBLite consensus disorder prediction 1 115 - -
Vivi212g00010 487 SMART B3_2 128 233 IPR003340 GO:0003677
Vivi212g00010 487 Pfam B3 DNA binding domain 128 220 IPR003340 GO:0003677
Vivi212g00010 487 CDD B3_DNA 126 221 IPR003340 GO:0003677
Vivi212g00010 487 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 31 447 IPR044800 GO:0003700
Vivi212g00010 487 MobiDBLite consensus disorder prediction 37 57 - -
Vivi212g00010 487 MobiDBLite consensus disorder prediction 431 487 - -
Vivi212g00010 487 MobiDBLite consensus disorder prediction 402 421 - -
Vivi212g00010 487 MobiDBLite consensus disorder prediction 70 90 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi212g00010 123 232 B3 DNA Binding Superfamily AT1G01030 86.486 2.70e-62 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vivi212g00010 B3 9.9e-28 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi212g00010 K09287 - vvo:131612952 775.007