Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi210g00006 ATGAAACAGAAAGTGAGAGTGATGGAACCATTTACAAGAGATCACCGTGGCTCACTAGAAGTCTTCAATCCATCTTCATCTGAGAACAACGACGAAAATCCGAATCCAAATCCAAATCCCAGCAGCTCATGGAACACTTGGACAAGCTCACGCGCCACCGAAACTCCACCAACGCGCGATTCCATTATCTCCGACGAAGTCCCCGTCGCCACCTCTTGGATGGCGCTGAAAGAAACCACGGCTCCTTCAAAATCCGGCGAGTCAGGCTCCGCTGCGGAGCAGAGAGCGGCGGAGTGGGGATTAGTGCTGAAAACTGATTCAGAGACAGGAAAGCCACAGGGAGTTGGTGTTCGAGGCTCCGGTGGCGGCGGTGGTTCGAGGAGAGACTCGAACAACTCGGTGAGAAGCTCCGGTGAGTCTTCCGATGACGGAAGGGAGGGTGGTAGGGGGATTCCGAGAGTTTCGGAGGATTTGAGAGATGCTCTATCGGCTTTTCAACAAACTTTTGTGGTTTCGGATGCTACCAAACCCGATTACCCGATTATGTATGCGAGTGCCGGGTTTTTTAATATGACGGGTTATACTTCCAAAGAGGTCATAGGAAGAAACTGTCGGTTTATGCAGGGAGCTGATACGGATCCGAATGACGTGGCAAAGATAAGAGAAGCGCTTGCGGCGGGAACGAGTTATTGTGGGAGGTTATTGAATTACAAGAAGGATGGAACAACGTTCTGGAACCTTCTAACTATTGCTCCTATTAAGGACGAACATGGAAAAATACTGAAACTTATAGGAATGCAAGTGGAGGTTAGTAAGCATACAGAGGGGACCAAGGAGAAGATGCTGCGTCCCAATGGATTGCCCGAATCGTTGATTCGATATGATGCTCGTCAGAAAGAGAAGGCAAACTCAACAGTTACTGAGTTGGTGGAGGCAGTGAGCAAAAGACCACGCTCACTCAGTGAATCAGCAAACCGTCTCCCCTTCATCAAAAAGCCAACAAATGGCCATGCAACACCACCAAATTCCAAATCATCAAGGAGAAAATCTGATAGCACTTTGCGTTCATTCCGACGCAAATCACATTCAGGAGCTGACAACTTTAACTCAATGCATCCCATCACTGAGCTCCCAGAAAACAAAAACAAATCACGCCGCCGCTCTTTCATGGGGTTCATGAGGAAAAGTCTGTCAAACAATGAAAGATTAATCAATGATGAACAAGTTCTTGACGGGGATAGCTCTGAGGATGATGATAGGCCTGATAGTTTTGATGACAAAAATATTACACTAAAGAGGGAAAAGAGAAAAGGTCTTGATCTTGCTACCACACTTGAACGTATCGAGAAAAACTTTGTCATTACTGATCCAAGGCTCCCTGATAACCCCATTATCTTTGCCTCTGATAGCTTCTTAGAGCTTACCGAGTATTCTCGTGAAGAAATCTTGGGGAGAAATTGCAGGTTTCTGCAAGGACCTGAAACTGATCCTGCAACAGTGAAAAAAATAAGATATGCAATTGACAATCAAATAGAAGTTACTGTGCAGCTCATTAATTATACCAAGACTGGTAAAAAGTTCTGGAATCTGTTTCATTTGCAGCCAATGCGTGATCAGAAGGGAGAGGTACAGTATTTTATTGGAGTTCAACTTGATGGTAGTCAACATGTTGAGCCTCTTCACAACCGCATTGCAGAAGATACAGCAAAGGAGGGAGAAAATTTGGTTAAGAAAACTGCAGAAAATGTTGATGATGCATTGAGAGAACTCCCAGATGCTAATATGAAACCAGAAGATCTATGGATGAATCATTCAAAAGTGGTTCGTCCTAAACCTCATAGGAGGGAAGATGCTGCTTGGAGAGCTATTCAGAAGATCATGGAGAGTGGAGAGAAGATAGGCTTGAAGCATTTTAAGCCAATTAAACCATTAGGCTCAGGAGACACTGGCAGTGTTCATCTGGTGGAGCTATGTGGAACTAATCATCATTTTGCCATGAAGGCTATGGACAAGGGTGTTATGCTCAATCGTAACAAGGTGCATAGAGCTTGCACAGAGAGAGAAATCCTAGACATGTTGGACCACCCTTTTCTTCCTGCATTATATGCTTCCTTTCAGACCAAAACACATATTTGTTTGATAACTGATTACTGTCCTGGAGGAGAACTATTTATGCTGCTCGACCGCCAGCCGGCGAAGGTTCTCAAGGAAGATGCAGTGAGATTTTATGCCACTGAAGTAGTTGTTGCGTTGGAATATCTTCATTGTCAAGGGATAATATATAGGGATTTAAAGCCAGAAAATGTGTTACTACAAAGCACTGGACACGTGTCTTTAACAGATTTCGATTTATCATGTTTAACATCATGCAAACCAGAGCTCTTAGCTCCAAGTACAAATGACAAGAAGAAAGGACAGCATGGTCCAATATTTATGGCTGAACCAATGAGAGCATCAAATTCTTTTGTTGGCACAGAAGAGTACATAGCTCCGGAAATTATAACTGGTTCAGGCCATACTAGTGCTGTGGATTGGTGGGCTCTAGGAATTCTTCTGTATGAAATGTTTTATGGATATACACCATTCCGGGGAAAGAATAGGCAAAGAACATTTGCGAATATTCTCCACAAGGATCTTAAATTTCCCAAAAGTAAACAGGTTAGTCTCAGTGCAAAACAGCTCATTTATCACTTGTTGCAAAGAGATCCAACTAGCAGGTTGGGCTCAAAGGGAGGAGCAAATGATATTAAGAACCATTCCTTCTTCAAGGGTATCAATTGGGCCTTAGTTAGATGCACGAAACCTCCGGAGCTCGATGCTCCTCTTTTTGATACAAACAAAGAGGAAAAGGAAAAGGAAAAGGATGACAAGTATGTAGATAATGGACAAGAGGATATGAATGTCTTCTGA 2910 0.4361 MKQKVRVMEPFTRDHRGSLEVFNPSSSENNDENPNPNPNPSSSWNTWTSSRATETPPTRDSIISDEVPVATSWMALKETTAPSKSGESGSAAEQRAAEWGLVLKTDSETGKPQGVGVRGSGGGGGSRRDSNNSVRSSGESSDDGREGGRGIPRVSEDLRDALSAFQQTFVVSDATKPDYPIMYASAGFFNMTGYTSKEVIGRNCRFMQGADTDPNDVAKIREALAAGTSYCGRLLNYKKDGTTFWNLLTIAPIKDEHGKILKLIGMQVEVSKHTEGTKEKMLRPNGLPESLIRYDARQKEKANSTVTELVEAVSKRPRSLSESANRLPFIKKPTNGHATPPNSKSSRRKSDSTLRSFRRKSHSGADNFNSMHPITELPENKNKSRRRSFMGFMRKSLSNNERLINDEQVLDGDSSEDDDRPDSFDDKNITLKREKRKGLDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDPATVKKIRYAIDNQIEVTVQLINYTKTGKKFWNLFHLQPMRDQKGEVQYFIGVQLDGSQHVEPLHNRIAEDTAKEGENLVKKTAENVDDALRELPDANMKPEDLWMNHSKVVRPKPHRREDAAWRAIQKIMESGEKIGLKHFKPIKPLGSGDTGSVHLVELCGTNHHFAMKAMDKGVMLNRNKVHRACTEREILDMLDHPFLPALYASFQTKTHICLITDYCPGGELFMLLDRQPAKVLKEDAVRFYATEVVVALEYLHCQGIIYRDLKPENVLLQSTGHVSLTDFDLSCLTSCKPELLAPSTNDKKKGQHGPIFMAEPMRASNSFVGTEEYIAPEIITGSGHTSAVDWWALGILLYEMFYGYTPFRGKNRQRTFANILHKDLKFPKSKQVSLSAKQLIYHLLQRDPTSRLGSKGGANDIKNHSFFKGINWALVRCTKPPELDAPLFDTNKEEKEKEKDDKYVDNGQEDMNVF 969
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi210g00006 969 MobiDBLite consensus disorder prediction 363 377 - -
Vivi210g00006 969 CDD STKc_phototropin_like 636 941 - -
Vivi210g00006 969 Pfam Protein kinase domain 640 922 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi210g00006 969 ProSiteProfiles PAC domain profile. 511 565 IPR000700 -
Vivi210g00006 969 FunFam Putative LOV domain-containing protein 168 325 - -
Vivi210g00006 969 MobiDBLite consensus disorder prediction 940 969 - -
Vivi210g00006 969 SUPERFAMILY Protein kinase-like (PK-like) 622 940 IPR011009 -
Vivi210g00006 969 MobiDBLite consensus disorder prediction 348 362 - -
Vivi210g00006 969 MobiDBLite consensus disorder prediction 19 60 - -
Vivi210g00006 969 Pfam PAS domain 460 552 IPR000014 -
Vivi210g00006 969 Pfam PAS domain 175 271 IPR000014 -
Vivi210g00006 969 ProSiteProfiles PAS repeat profile. 154 224 IPR000014 -
Vivi210g00006 969 MobiDBLite consensus disorder prediction 1 16 - -
Vivi210g00006 969 SMART pac_2 514 556 IPR001610 -
Vivi210g00006 969 SMART pac_2 231 273 IPR001610 -
Vivi210g00006 969 FunFam Putative LOV domain-containing protein 722 934 - -
Vivi210g00006 969 MobiDBLite consensus disorder prediction 76 90 - -
Vivi210g00006 969 Gene3D PAS domain 168 328 - -
Vivi210g00006 969 ProSiteProfiles Protein kinase domain profile. 638 922 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi210g00006 969 ProSiteProfiles PAS repeat profile. 437 510 IPR000014 -
Vivi210g00006 969 FunFam LOV domain-containing protein 637 721 - -
Vivi210g00006 969 Coils Coil 569 589 - -
Vivi210g00006 969 ProSitePatterns Serine/Threonine protein kinases active-site signature. 759 771 IPR008271 GO:0004672|GO:0006468
Vivi210g00006 969 Gene3D Transferase(Phosphotransferase) domain 1 722 934 - -
Vivi210g00006 969 MobiDBLite consensus disorder prediction 1 152 - -
Vivi210g00006 969 SUPERFAMILY PYP-like sensor domain (PAS domain) 453 552 IPR035965 -
Vivi210g00006 969 SUPERFAMILY PYP-like sensor domain (PAS domain) 175 267 IPR035965 -
Vivi210g00006 969 MobiDBLite consensus disorder prediction 403 427 - -
Vivi210g00006 969 MobiDBLite consensus disorder prediction 303 386 - -
Vivi210g00006 969 Gene3D PAS domain 427 590 - -
Vivi210g00006 969 PANTHER FLIPPASE KINASE 1-RELATED 137 948 - -
Vivi210g00006 969 Gene3D Phosphorylase Kinase; domain 1 637 721 - -
Vivi210g00006 969 MobiDBLite consensus disorder prediction 941 962 - -
Vivi210g00006 969 SMART pas_2 156 225 IPR000014 -
Vivi210g00006 969 SMART pas_2 439 508 IPR000014 -
Vivi210g00006 969 FunFam LOV domain-containing protein 425 590 - -
Vivi210g00006 969 ProSiteProfiles PAC domain profile. 228 282 IPR000700 -
Vivi210g00006 969 CDD PAS 181 270 IPR000014 -
Vivi210g00006 969 SMART serkin_6 638 922 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi210g00006 969 CDD PAS 452 552 IPR000014 -
Vivi210g00006 969 NCBIfam PAS domain S-box protein 181 274 IPR000014 -
Vivi210g00006 969 NCBIfam PAS domain S-box protein 462 552 IPR000014 -
Vivi210g00006 969 ProSitePatterns Protein kinases ATP-binding region signature. 644 667 IPR017441 GO:0005524
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi210g00006 13 969 AGC Kinase Gene Family AT3G45780 69.347 0.0 1340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Vivi210g00006 Pkinase 3.4e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi210g00006 K20715 - gmx:100804524 1417.52