LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi210g00002	ATGATGAACGATAATGTTGGGAATAAAAGTTTGGGGGAACAAAATCGCGAAGTTAATGAAGGGCTAGGTTCTGAATCGTCAACTGGAAATGACACGAGATTTAGTAAGGTAACGAAGGAGGGAAACAATGGGTTGAAGGGATCGAGTCAGATCCATGAGAGGTTTCAGGTTTCACCGCAACCACTACCCCGAGCTCCGGTTACTTACTGGGAAAGGTTTCTCCCTGTTACATCGATAAAAGTTTTGTTGGTGGACGATGATGACTCCACGCGTAATGTTGTGTGTGCTCTGTTAAAGAATTGTGGTTATGAAGTCACTGCTGTTTCCAATGGTCTTCAAGCGTGGAAAGTTCTAGAAGATCCAGGAAATCGAATTGATCTTGTTCTAACGGAGGTAGCTATGCCTTTTGTATCTGGAATAGGTCTTTTGTGCAAGATCATGAGCCACATAGCTCTGAAGAATATTCCTGTGATTATGATGTCATCTCACGATTCTATGGGTATTGTCTTTAAGTGTTTGTCAAAAGGAGCAGCTGATTTTTTAGTGAAACCTATTCGGAGGAATGAACTTAAAAACCTCTGGCAACATGTTTGGAGAAGATGCCATAGTTCTAGTGATAGTGGGAGTGAAAGTGGGACAAACACCCGGAAATTTGCAAAGTCAAGGAGCATCTGTGCATATGACAACAACAGTGGTAGCAGTGATGAGAATGATTATGGAAGCAGAGGCTTGAGTGTTAGAGATGGAAGTGACAAAGGAAGTGGAACTCAGAGTTCATGGACTACAAATCTAGCTCAAATTAGCAGCAGCCCTCATCCAGTTTCACCTCATAAACAATCTCATGACACTCCTGATAGCACGTGTGCCCAAGTGGTGCTTCCAAAGCCTGAAAACATTAGTAGTAGTAAGTGGGACCAGGCCACAGAAAAAGAGTGCCATAAACCGATTGATCATCCTGATGATATTGCAATGGGTAAAGATTTAGCTATGGGAATATCATTGAACATGCAAGAAAAGCATCCACATGAGGAACTGTCTAACAATCCAATGTGTAAAGGAGTTAATAAGATGTCTGATACAGATGGTATGCAACTCAATAAAGGACATAGTAGTGTTCGTGAAAAAGTACAACCGGAAGAGGACAGTGATAGAACCAGGATGCAGGAAAATCAGGCTATGAATGTTGGTGTCACTGATAGCAGTAGTCCACAGGCTGAAAGCAGAGATTTGAATACTTCAAATGGTTTTTCTGGTTTTGCAAAAACAAAAACAAGTTGCTTCAAACAGCACCCATCACTTGAACTAACATTGAAAAGGATGGGAGAAGTAAAAGATGCTGAACATGTCACAGGTGATGAATGTAATGTTTTGAGACATTCAGATCTGTCGGCATTCTCCAAATACAATACAGCTTCCGCTTACCAGGCTCAGACTGGAAATGTAGGAAGCTGTTCCCCACTAGACAATAGTTCAGTTTCACCAAATACAGAGACAATACAGAACTTCACATCTCATTCAAATGCCACTCTTCCAAATCAACAGTCTAATGGGAGCAACAACATGAACGACCTGGCTTCCACTAATACATATCTTAGCACTAAACCTGAAAATTTTGAAAAGAAACCCGAGTCTTCGAAAGGGATTGGCTCTTTTACTTCTTCTGAACTCCAAATCGTGCAAAATAATAGTGTCTCTACATCTCAGAAGAAGACTTCTGCCCAGGAAGAATGTGCTGGAAGCATTAAAGGACAGGTAGGAGGCTTTGAACAAGGATTTCAAGTCGAGCATGCTCAGCATCAACTTCAACATTGTAACCGCATTGCCCACAAGGAGGCAGTAGATCTCCGTTCAGTTCATGATATCTTAGTTGAAAGCACAACCAAAGATGATCAGCAATGTATGTCAAATGCCTTTGGAGAGCCAGCAGAAAGTAATGGCACAGCTACAAACTATGGGAAGGATGGAAGTGCAGCTGAAAGTGATCATGGGAGCAATGGGCAGGACGGAAGCAACACTTTGACAATCGGAATGATAAATATGAGAAATAGCAATGTGGAGGCTGGGAGCTTTGGAATTAGTGGCATTGATAAAGTAAACATTGGAAGTGGGTCTTATGAACAACGATTTGCATTGAGAGAGGCTGCCTTGTTAAAGTTTCGTCTAAAGAGAAAAGAAAGATGCTTTGAAAAGAAGGTTAGATATCAGAGCCGGAAAAAATTGGCAGATCAGCGGCCGCGTGTTAGGGGACAATTTGTTAAACAAATAGTGTATGGTACCAATGAAGAAAATAAAGAAAGCGAGGAACTTGTATCTATGGATAATTCTAACGATGATCCCAAACAACACCAACCAAATTGCTGA	2361	0.4134	MMNDNVGNKSLGEQNREVNEGLGSESSTGNDTRFSKVTKEGNNGLKGSSQIHERFQVSPQPLPRAPVTYWERFLPVTSIKVLLVDDDDSTRNVVCALLKNCGYEVTAVSNGLQAWKVLEDPGNRIDLVLTEVAMPFVSGIGLLCKIMSHIALKNIPVIMMSSHDSMGIVFKCLSKGAADFLVKPIRRNELKNLWQHVWRRCHSSSDSGSESGTNTRKFAKSRSICAYDNNSGSSDENDYGSRGLSVRDGSDKGSGTQSSWTTNLAQISSSPHPVSPHKQSHDTPDSTCAQVVLPKPENISSSKWDQATEKECHKPIDHPDDIAMGKDLAMGISLNMQEKHPHEELSNNPMCKGVNKMSDTDGMQLNKGHSSVREKVQPEEDSDRTRMQENQAMNVGVTDSSSPQAESRDLNTSNGFSGFAKTKTSCFKQHPSLELTLKRMGEVKDAEHVTGDECNVLRHSDLSAFSKYNTASAYQAQTGNVGSCSPLDNSSVSPNTETIQNFTSHSNATLPNQQSNGSNNMNDLASTNTYLSTKPENFEKKPESSKGIGSFTSSELQIVQNNSVSTSQKKTSAQEECAGSIKGQVGGFEQGFQVEHAQHQLQHCNRIAHKEAVDLRSVHDILVESTTKDDQQCMSNAFGEPAESNGTATNYGKDGSAAESDHGSNGQDGSNTLTIGMINMRNSNVEAGSFGISGIDKVNIGSGSYEQRFALREAALLKFRLKRKERCFEKKVRYQSRKKLADQRPRVRGQFVKQIVYGTNEENKESEELVSMDNSNDDPKQHQPNC	786

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi210g00002	786	SMART	REC_2	79	194	IPR001789	GO:0000160
	Vivi210g00002	786	MobiDBLite	consensus disorder prediction	762	786	-	-
	Vivi210g00002	786	Pfam	CCT motif	712	754	IPR010402	GO:0005515
	Vivi210g00002	786	MobiDBLite	consensus disorder prediction	339	414	-	-
	Vivi210g00002	786	MobiDBLite	consensus disorder prediction	388	414	-	-
	Vivi210g00002	786	SUPERFAMILY	CheY-like	78	205	IPR011006	-
	Vivi210g00002	786	ProSiteProfiles	Response regulatory domain profile.	80	198	IPR001789	GO:0000160
	Vivi210g00002	786	PANTHER	TWO-COMPONENT RESPONSE REGULATOR	80	366	IPR045279	GO:0009736
	Vivi210g00002	786	CDD	psREC_PRR	81	184	-	-
	Vivi210g00002	786	MobiDBLite	consensus disorder prediction	231	288	-	-
	Vivi210g00002	786	Gene3D	-	78	230	-	-
	Vivi210g00002	786	MobiDBLite	consensus disorder prediction	351	371	-	-
	Vivi210g00002	786	ProSiteProfiles	CCT domain profile.	712	754	IPR010402	GO:0005515
	Vivi210g00002	786	MobiDBLite	consensus disorder prediction	1	50	-	-
	Vivi210g00002	786	FunFam	Two-component response regulator-like PRR37	79	237	-	-
	Vivi210g00002	786	Pfam	Response regulator receiver domain	81	192	IPR001789	GO:0000160
	Vivi210g00002	786	MobiDBLite	consensus disorder prediction	250	288	-	-
	Vivi210g00002	786	MobiDBLite	consensus disorder prediction	633	674	-	-
	Vivi210g00002	786	MobiDBLite	consensus disorder prediction	372	387	-	-

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi210g00002	63	472	Response Regulator Gene Family	AT5G60100	45.694	3.78e-85	275

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	Pseudo ARR-B	Vivi210g00002		Response_reg	4.1e-21	CL0304

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi210g00002	K12129		-	gmx:100785796	889.026