Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi209g00001 ATGGAGATTCACAAAAACACAAACAAGAAATGGGGAGGTTCCAAAAAGGAATCAAAATGGAAGAAGATGATTTTCTTCAACACTTCAAAAACCACCCAAAAACCACCTCAAGAATTTCTCTGCCCCATTTCTGGTTCTCTCATGTCCGACCCTGTAATTGTCTCCTCCGGCCATTCCTTCGACCGAACCTCAATCCAAGCCTGTAAAAATCTCAACTTTACCCCTCAGCTCCAAGATGGCACCACCCCCAATTTCACAACCCTAATCCCAAATCTCAACCTCAAATCCTCAATTCTCAAATGGACCCAATCCCAATCCAAATTCCAAACCCAAACCAACCAAAATCTCACCACAACTGAAAACCTCGTACGTACGTTAATGTCCTCAAAAAAACATCAACAACCCCCAAACGACATCGTATCAGTGAAAAACGACCAAGAAAAAGAAACACTACAAATCCCAATCTTAACACCACGAAAAACCTCGTACTCGAGCTCAGAGGAATCCATAGCTACTGCCACGTCATCATCATCGACAACAACACCAAAATTTCAAAGCTACTGTTACTCTTCACCTTCCTCTTCCGAAATTGAACCTTCAACATCACCAGAAGAAGAAGAATTCGTGGCCAAGCTCAGAAACCCTCAATCGATTATAGTAGAAGAAGCTCTAATCTCTCTCAGAAAAGTCACGAAAACGAAAGAGGAATCTAGGGTTCAACTCTGCACCAATAGGATACTCTGTTCTTTGCGTTCTTTGATTTTATCCAAAAACGACGTCGTAAGAGTCAACGCTCTTGCTTCATTAGTCAATATTTCACTAGAGAAAGTCAACAAAGTGAAGATCGTACGGTCGGGAATTGTTCCACCGTTGATTGAGATTTTGAAATTTGGATCCTGTGAATCGCAGGAACATGCTTCGTGTGTGCTCTTTAGTTTAGCGCTTGATGATGATAATAAAACTGCGATTGGTGTTTTGGGTGCTCTTTTGCCTTTGCTTCACGCGCTTAAGTCGGAGAGTGAGAAGACGCGTCATGACTCGAGTTTGGCTCTTTGTCATTTGTCTTTAGTGAAGAGTAATAGGGTTAAGATGGTTAAACTCGGGTTTGTTTCGGTTCTTTTGGGAATGGTTAAGTCGGGTTATATGATGGATCGGGTTTTGTTGATTTTGGGTAATTTGGGGTTTGGGCCGGATGGTCGGGCTGCGATGTTGGATGCGGGTGTTGTGGAGTGTTTGGTGGGTTTGTTGGATGGAACTGAGTTGGATTCTGAGTCAACTCGAGAGAGATGTGTTGGGATTTTGTATATACTAAGTCATGGCGGGTTGAGGTTTAAGGCGGTGGCGAAAGAGATTAGGGTTGTGGAAATGTTGCAAAAGATGGAGAAAATGAAGAGTGAAAAAGCTAATGAGAAGGTGAAGAGGATATTGGAAATTATGAGTGAGAAGGAGATGGAGGAGGAAGAGGTGGATTGGGAGGAGTTGCTTGACTCGGGGTTCAGTGGTCGAACTATGAGTCGACTCAGTAATGGGTTGGACGAGTCAAATGTTAACTCGAATGAGTTTTGA 1566 0.4291 MEIHKNTNKKWGGSKKESKWKKMIFFNTSKTTQKPPQEFLCPISGSLMSDPVIVSSGHSFDRTSIQACKNLNFTPQLQDGTTPNFTTLIPNLNLKSSILKWTQSQSKFQTQTNQNLTTTENLVRTLMSSKKHQQPPNDIVSVKNDQEKETLQIPILTPRKTSYSSSEESIATATSSSSTTTPKFQSYCYSSPSSSEIEPSTSPEEEEFVAKLRNPQSIIVEEALISLRKVTKTKEESRVQLCTNRILCSLRSLILSKNDVVRVNALASLVNISLEKVNKVKIVRSGIVPPLIEILKFGSCESQEHASCVLFSLALDDDNKTAIGVLGALLPLLHALKSESEKTRHDSSLALCHLSLVKSNRVKMVKLGFVSVLLGMVKSGYMMDRVLLILGNLGFGPDGRAAMLDAGVVECLVGLLDGTELDSESTRERCVGILYILSHGGLRFKAVAKEIRVVEMLQKMEKMKSEKANEKVKRILEIMSEKEMEEEEVDWEELLDSGFSGRTMSRLSNGLDESNVNSNEF 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi209g00001 521 SUPERFAMILY ARM repeat 208 480 IPR016024 -
Vivi209g00001 521 SMART Ubox_2 38 101 IPR003613 GO:0004842|GO:0016567
Vivi209g00001 521 Gene3D - 201 478 IPR011989 -
Vivi209g00001 521 MobiDBLite consensus disorder prediction 501 521 - -
Vivi209g00001 521 PANTHER U BOX DOMAIN-CONTAINING 27 480 - -
Vivi209g00001 521 SUPERFAMILY RING/U-box 28 105 - -
Vivi209g00001 521 Coils Coil 453 473 - -
Vivi209g00001 521 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 15 122 IPR013083 -
Vivi209g00001 521 SMART arm_5 234 274 IPR000225 GO:0005515
Vivi209g00001 521 SMART arm_5 316 356 IPR000225 GO:0005515
Vivi209g00001 521 SMART arm_5 275 315 IPR000225 GO:0005515
Vivi209g00001 521 SMART arm_5 396 439 IPR000225 GO:0005515
Vivi209g00001 521 ProSiteProfiles U-box domain profile. 34 108 IPR003613 GO:0004842|GO:0016567
Vivi209g00001 521 MobiDBLite consensus disorder prediction 157 182 - -
Vivi209g00001 521 Pfam Armadillo/beta-catenin-like repeat 278 314 IPR000225 GO:0005515
Vivi209g00001 521 Pfam U-box domain 36 106 IPR003613 GO:0004842|GO:0016567
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi209g00001 1 521 U-box Gene Family AT5G40140 48.208 2.01e-149 437
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi209g00001 - - lja:Lj2g3v1020040.1 567.385