Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi206g00015 ATGAAGGAAGGTGAAAAAAGCTTAGATCCGCAACTATGGCACGCGTGTGCTGGAGGAATGGTTCAAATGCCATCAGTGAACACTAAAGTTTTCTACTTTCCTCAAGGGCATGCAGAACATGCTCAATCCAATGTTGATTTTGGAGATTCTTTCAGAATTCCACCGCTTGTTCTATGTCGTGTAGCTTCTGTGAAATTCTTGGCTGACCCTGAAACAGATGAAGTGTTTTCAAAGATAAAGTTGATTCCTTTGAGAAATTCTGAGATTGAGAATGAAGATTGTGATGGTTTTAATGGTGGTGATGGTTCTGAGAGTTCTGAAAAGCCTGCTTCTTTTGCAAAGACTTTGACTCAATCTGATGCAAACAATGGTGGAGGGTTTTCGGTTCCGAGATACTGCGCGGAGACGATTTTTCCTCGGCTCGATTACTCGGCTGAGCCACCGGTTCAGACGGTGATTGCGAAGGATGTTCATGGTGAGGTTTGGAAGTTTAGACATATCTATAGAGGAACTCCGAGGAGGCATTTGTTGACAACTGGTTGGAGTAGTTTTGTGAATCAGAAAAAGCTTGTTGCAGGTGATTCTATTGTGTTTCTGAGAGGTGAAAATGGTGAACTTTATGTTGGGATTCGTCGTGCGAAGAGAGGGATGGTGAATGGATTGGAATCACCTTCTGGGTGGAGTTCTGGTAATGGAAGTTCTGGTCTTGGAATTGGACCTTATGGTGGTGCTTTTTCGGTTTTTTTGAGGGAAGAAAATAACAAGTTGTTGAGAAATGTGGTTGGTGATGGGGGTGTTGGTGGTAATTTGGGAGGTGGAAGAGCGAAAGTGAGTGGTGAATCGGTGAAAGAAGCGATGAGACTTGCGGCTAGTAACCAAACATTTGAGGTTGTTTACTATCCGAGAGCGAGTACTCCTGAGTTTTGTGTTAAGGTTTCATCGGTTAAAGCTGCTATGAGAACTCAATGGTGTTCTGGTATGAGGTTTAAGATGCCATTTGAAACCGAGGATTCTTCGAGGATTAGTTGGTTCATGGGGACAATTTCGTCTGTTCATGTTGTCGATCCGATTCGTTGGCCTAATTCGCCTTGGAGACTTCTTCAGGTAACTTGGGACGAACCGGATTTGCTACACAATGTGAAGCGAGTTAGTCCGTGGTTGGTTGAATTGGTATCAAGCATGTCGGTGATTCATCTCTCGCCCTTTTCGCCACCGAGAAAGAAACTTCGTTTTCCACAACATCCCGATTTCCCTCTTGATGTTGTTCAGTTTCCGATACCGACGTTTACAGGCAACCCTCTCAACCCGTTGTGTTGTCTATCGTCTTCTTCCGATCATTATAACGCTCCTGCCGCAGGCATTCAGGGAGCCAGGCATGCTCAAATTGGAATATCTTTATCAGATCTTCGAGTTAACGACATCAACAACAATAGAATTCAGTTAGGTGTGTTTCCGAATAACCCCGAGACGATTTCTAATGATAAGAGCAAAGAAAGCTTATCATGTTTGTTGACCATAGGAAACTCTCATAAGAGAAGTTTGGAGATAAATTCTGATAATAATGTTAAGAGACACCAATTTTTGCTTTTCGGTCAACCGATTCTCACCGAGCAACAAATCTCTAGAAAAGCTTCTAGTGATAAAGACAAAGAGAAACGGTTTTTAAGTGATACTTCTCAATCTTCGATTTCCGAACAGTTTTCACCGGGAAAATCTTCTACTACTACAGCTAGTACCACCGAGTTTTGTTGGCAACAACTTGGATTAGATACCGGTCATTGTAAGGTTTTCTTGGAGTCAGAAGATGTTGGAAGAACCTTAGATTTGTCATGTGTTGGTTCTTATGAAGAACTATACAGAACACTGACTAAAATGTTTGGTTTAGAAAGATCCGAGATGTTGAGTCGCGTGGTCTATCGTGACGCAACAGGTACTGTTAAACAAACCGGTGAAGAACCCTTCAGTGATTTCATGAAAACAGCAAAAAGATTAACAATTCTGATGGATTCAGCTAGCAAGGATGATACTAGAAGGATTTGTATCACAGGAGCTAGGAATGGTGAATGTGGATTAGATGCATCAAATAAGACAGGACCTATGAGCATATTTGCTTAA 2115 0.4208 MKEGEKSLDPQLWHACAGGMVQMPSVNTKVFYFPQGHAEHAQSNVDFGDSFRIPPLVLCRVASVKFLADPETDEVFSKIKLIPLRNSEIENEDCDGFNGGDGSESSEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTVIAKDVHGEVWKFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSIVFLRGENGELYVGIRRAKRGMVNGLESPSGWSSGNGSSGLGIGPYGGAFSVFLREENNKLLRNVVGDGGVGGNLGGGRAKVSGESVKEAMRLAASNQTFEVVYYPRASTPEFCVKVSSVKAAMRTQWCSGMRFKMPFETEDSSRISWFMGTISSVHVVDPIRWPNSPWRLLQVTWDEPDLLHNVKRVSPWLVELVSSMSVIHLSPFSPPRKKLRFPQHPDFPLDVVQFPIPTFTGNPLNPLCCLSSSSDHYNAPAAGIQGARHAQIGISLSDLRVNDINNNRIQLGVFPNNPETISNDKSKESLSCLLTIGNSHKRSLEINSDNNVKRHQFLLFGQPILTEQQISRKASSDKDKEKRFLSDTSQSSISEQFSPGKSSTTTASTTEFCWQQLGLDTGHCKVFLESEDVGRTLDLSCVGSYEELYRTLTKMFGLERSEMLSRVVYRDATGTVKQTGEEPFSDFMKTAKRLTILMDSASKDDTRRICITGARNGECGLDASNKTGPMSIFA 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi206g00015 704 ProSiteProfiles B3 DNA-binding domain profile. 112 214 IPR003340 GO:0003677
Vivi206g00015 704 MobiDBLite consensus disorder prediction 540 576 - -
Vivi206g00015 704 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 6 669 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vivi206g00015 704 SUPERFAMILY DNA-binding pseudobarrel domain 105 213 IPR015300 -
Vivi206g00015 704 SMART B3_2 112 214 IPR003340 GO:0003677
Vivi206g00015 704 Gene3D - 110 214 IPR015300 -
Vivi206g00015 704 ProSiteProfiles PB1 domain profile. 591 671 IPR000270 GO:0005515
Vivi206g00015 704 MobiDBLite consensus disorder prediction 92 112 - -
Vivi206g00015 704 Gene3D - 590 674 - -
Vivi206g00015 704 FunFam Auxin response factor 323 396 - -
Vivi206g00015 704 Gene3D - 323 397 - -
Vivi206g00015 704 CDD B3_DNA 111 212 IPR003340 GO:0003677
Vivi206g00015 704 MobiDBLite consensus disorder prediction 542 556 - -
Vivi206g00015 704 Pfam Auxin response factor 285 368 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vivi206g00015 704 MobiDBLite consensus disorder prediction 557 576 - -
Vivi206g00015 704 Pfam B3 DNA binding domain 112 213 IPR003340 GO:0003677
Vivi206g00015 704 FunFam Auxin response factor 110 214 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi206g00015 1 673 B3 DNA Binding Superfamily AT4G30080 57.351 0.0 734
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vivi206g00015 B3 1.4e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi206g00015 - - gmx:100778135 966.452