Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi206g00014 ATGCCTGAGGATATTCCTAACATGAAGGACTCTTGGTTTTTTGACAAGAATTTTAATGGGTTGTCGGATGAGATTTTCGACGAGCTTCATTTTTTCGATTTTCCGTTAGAAGATGTTGAGACTAATCCTGTTGAAGAAGATTGGAGTGCTCGATTTCAAAGCATTGATGAGCCGTGTTTTGATGCTTTTTCAGTGACACCAGTGGGATTGTGTGGCAAAACTAAAAATGAAAATCCCCAAGTTGGGAATGGCTTCTCTGCTGCTCCTTGTAACGAAATTTCCTCAATAAAAGAAGTGGCAAAGACTGTTGAACCAACATATGGAAAAACTATTCCCAACCAGGATGCCTTATATGGAAAAACTATACCCAACCAGGATGCCTCTTTCTATGAAAAGAAAGTTTTGCTTCAATACAGCCCAGTTTCTGTTTTCGAAGGCAGTAGTGGTGCTTCCTCAGTTGAGAATTCCACCTTTGACCTGCCCGTCTTCCCAGTAAAGCGCCCTCGAAGTAAACGCCGGCGTCCCTCAAAGTCAAATCCTGTATTTTCATTTTCTTTCATACCTAATTCACCGACATTGCAAAAACATTATAAAACACCTGTCTCTAAGAAACAGAGAAAAAAGGACGTCTACGTGCCCTCAGGCGATGCTGATACGGGATCTCAAGAGTCAGTTACCTTCAGAAAATGCACGCATTGCGAGATCACAAAGACTCCACAATGGAGAGAGGGACCCAACGGTCCCAAAACGCTCTGCAATGCTTGTGGTGTTCGGTACAGGTCTGGCCGCCTCTATCCCGAATACCGTCCAGCAAACAGCCCCACTTTTGTAGAATCAGTTCACTCAAACTGTCACAAGAAGGTTCTCGAGATGCGAGGCGGCGGTGTCATCAAAGGAGGTGCTAGAAGCTGTTCTACGTCGCTGCCATCAACTCTTCCTGGAAACTCGGTAGGACAGCATTATCATGGAACTTATTGA 978 0.4427 MPEDIPNMKDSWFFDKNFNGLSDEIFDELHFFDFPLEDVETNPVEEDWSARFQSIDEPCFDAFSVTPVGLCGKTKNENPQVGNGFSAAPCNEISSIKEVAKTVEPTYGKTIPNQDALYGKTIPNQDASFYEKKVLLQYSPVSVFEGSSGASSVENSTFDLPVFPVKRPRSKRRRPSKSNPVFSFSFIPNSPTLQKHYKTPVSKKQRKKDVYVPSGDADTGSQESVTFRKCTHCEITKTPQWREGPNGPKTLCNACGVRYRSGRLYPEYRPANSPTFVESVHSNCHKKVLEMRGGGVIKGGARSCSTSLPSTLPGNSVGQHYHGTY 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi206g00014 325 MobiDBLite consensus disorder prediction 195 222 - -
Vivi206g00014 325 FunFam GATA transcription factor 220 302 - -
Vivi206g00014 325 PANTHER GATA TRANSCRIPTION FACTOR 40 292 - -
Vivi206g00014 325 ProSiteProfiles GATA-type zinc finger domain profile. 228 260 IPR000679 GO:0006355|GO:0043565
Vivi206g00014 325 ProSitePatterns GATA-type zinc finger domain. 230 255 IPR000679 GO:0006355|GO:0043565
Vivi206g00014 325 SMART GATA_3 224 274 IPR000679 GO:0006355|GO:0043565
Vivi206g00014 325 CDD ZnF_GATA 229 276 IPR000679 GO:0006355|GO:0043565
Vivi206g00014 325 Pfam GATA zinc finger 230 263 IPR000679 GO:0006355|GO:0043565
Vivi206g00014 325 Gene3D - 225 275 IPR013088 GO:0006355|GO:0008270
Vivi206g00014 325 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 227 285 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi206g00014 21 292 C2C2-Gata Transcription Factor Family AT1G08000 40.845 6.91e-57 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vivi206g00014 GATA 2.5e-16 CL0167