Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi206g00009 ATGGGGATACAAAAAGCACTGGTTTTCTATGCCGGTAAAGCCCCCAAAGGAGTGAAAACTAATTGGATTATGCATGAATATCGTCTTGCCAACGTTGATAGGCCCGCCAGCAAGAAAAATAATTTAAGGGGAACTCTTGTCCATCAAGAAAATGCTGAACTCCATAAAAAAATGGACTTCATTCAGAAAGAAAATGCAGAGCTACAGAAGAAGGTTTATGAAGCAAGGAGTACAAATGAAGAAAATGTGGCATCGAATCTTTCATGCACTATCAATGGATATGATTTACATGCGCCGATCAGTCTTCAGCTAAGGCAACCACAGGCTCAATACAGTGAACCCGCAACCATGAAATTATGA 360 0.4028 MGIQKALVFYAGKAPKGVKTNWIMHEYRLANVDRPASKKNNLRGTLVHQENAELHKKMDFIQKENAELQKKVYEARSTNEENVASNLSCTINGYDLHAPISLQLRQPQAQYSEPATMKL 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi206g00009 119 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 2 61 - -
Vivi206g00009 119 SUPERFAMILY NAC domain 2 32 IPR036093 GO:0003677|GO:0006355
Vivi206g00009 119 Coils Coil 51 78 - -
Vivi206g00009 119 ProSiteProfiles NAC domain profile. 1 50 IPR003441 GO:0003677|GO:0006355
Vivi206g00009 119 Pfam No apical meristem (NAM) protein 1 29 IPR003441 GO:0003677|GO:0006355
Vivi206g00009 119 Gene3D NAC domain 1 55 IPR036093 GO:0003677|GO:0006355
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi206g00009 1 43 NAC Transcription Factor Family AT5G08790 86.667 5.24e-21 83.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vivi206g00009 NAM 1.6e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi206g00009 - K09264 vvo:131626499 242.276