Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi206g00004 ATGGGATTTGATAATCCAAGATCTGAGAGGTTTGAAGATGATCCTGATATATCAAAAACTCCAACAACAAGTGGAGTTAAAGTGAAATATCACATTGATGGAACACAAATACCAGAACCAAGTTCGAGAAAGTCTAAGGTTACGAGGAACAAGTTTTTGAAAACAAGAGTATTATCGAGAGTATTCTCGGAGGATTACGAAAGAGTAAAAAAGAGAGTATTAGTATTAGATCCTAGGGGACAAATCATTCATCGTTGGAACAAGATATTTCTAGTAGCATGTTTGGTTTCGTTGTTTGTGGATCCTCTTTTCTTTTATTTGCCAGTAGTTAGAGAAGAAGTTTGTATTGATATTGGAAAAAATCTTGAGATTGTCCTCACAATTGTTAGATCAGTTGGGGATTTGTTTTACATGATTCAGATTTTCATGAAGTTTCGTACCGCATATGTTGCTCCTTCTTCCAAGGTTTTTGGTAGAGGAGAGCTTGTTCTTACGTATTCGAAGATCGCTGTTAGGTACTTCAGTAAGGGTTTTTGGTTAGACTTTATTGCTGCATTGCCTCTTCCTCAGGTGTTGATTTGGATTATTATCCCAACGCTTAGGGGTTCGACGATGGCGAACACGAAAAACGTCCTTCGTTTTTTCATCATTTTCCAATATATTCCGAGGCTATATTTGATTTTTCCACTTTCGTCGCAAATTGTGAAAGCTACGGGAGTTGTGACAGAAACAGCATGGGCAGGTGCTGCTTACAACCTCATGCTTTACATGTTGGCCAGCCATATTTTAGGAGCTTGCTGGTACCTTCTATCGATTGAACGTCAAGAAGCGTGTTGGAGAAGTGTGTGCAATATGGAGAAACCGAATTGTCAATACGGATTCTTTGATTGCCATCGAGTTAAAGATGCGTCGAGGGTCAAATGGTTTGTATCGAGTAATGTCACAAATTTATGTTCACCGAGTTCTGGCTTTTATCAGTTTGGTATATATGCTGATGCCATGACTTCCCAAGTTACATCCTCTCCATTCTTCAATAAGTACTTCTTTTGTCTCTGGTGGGGTTTAAGGAATCTCAGTTCTTTAGGACAAGGCCTTCTTACTAGCACTTTTATTGGAGAAATCATGGTTGCCATTGTTGTCGCAACTCTTGGATTGGTTCTTTTCGCGTTGCTGATTGGTAATATGCAGACATACCTTCAATCGATAACTGTTCGCCTAGAAGAGTGGAGGGTGAAAAGAACTGATACAGAACAATGGATGCATCACAGGCAACTACCTTCAGAACTACGAGAGTCTATTCGGAAATATAATCAATATAAATGGGTGGCTACGCGAGGAGTAGAAGAAGAAGATCTTCTCAAAGGACTTCCACTCGATCTTAGGAGAGACATCAAACGCCATCTTTGTCTTGAACTAGTTCGAGGAGTTCCGTTGTTTGATCAAATGGACGAGAGGATGCTAGACGCAATATGCGAAAGACTAAAGCCTGCATTATGCACTCAAGGAACATACCTTGTTCGCGAAGGCGATCCAGTGAACGAAATGCTCTTCATAATTCGAGGCCATCTTGATTCCTACACCACAAACGGAGGCCGAGACGGGTTCTTCAACTCATGCCGTATCGGTCCAGGTGATTTCTGCGGCGAAGAGCTATTAACATGGGCCTTAGATCCAAGACCAAGTGTGATACTCCCTTCGTCCACAAGAACAGTTAACGCTGTCTCAGAAGTAGAAGCGTTCGCGCTCATAGCCGAAGATCTTAAGTTTGTTGCATCACAATTTAGAAGACTACATAGTAAGCAACTAAGGCATAAATTCAGATTCTATTCACACCAATGGAGAACTTGGGCTGCATGTTTTGTTCAAGCTGCATGGAGAAGGCACAAGAAAAGGAAAGAAGCTGCTGAATTGAGGGCTAAGGAGAATCTTATGGCAACTTCGGAGACCGAAAGAGAAACAAAATTTGGGACAGGTTTTGTTGTTTATGGAACAAGGGTGGCAAGGAGTACTAGGAAAGGTGTGGTTAGCTCTTTGCAGAAACCAACAGAACCTGATTTTTCTGATGAATAA 2070 0.4106 MGFDNPRSERFEDDPDISKTPTTSGVKVKYHIDGTQIPEPSSRKSKVTRNKFLKTRVLSRVFSEDYERVKKRVLVLDPRGQIIHRWNKIFLVACLVSLFVDPLFFYLPVVREEVCIDIGKNLEIVLTIVRSVGDLFYMIQIFMKFRTAYVAPSSKVFGRGELVLTYSKIAVRYFSKGFWLDFIAALPLPQVLIWIIIPTLRGSTMANTKNVLRFFIIFQYIPRLYLIFPLSSQIVKATGVVTETAWAGAAYNLMLYMLASHILGACWYLLSIERQEACWRSVCNMEKPNCQYGFFDCHRVKDASRVKWFVSSNVTNLCSPSSGFYQFGIYADAMTSQVTSSPFFNKYFFCLWWGLRNLSSLGQGLLTSTFIGEIMVAIVVATLGLVLFALLIGNMQTYLQSITVRLEEWRVKRTDTEQWMHHRQLPSELRESIRKYNQYKWVATRGVEEEDLLKGLPLDLRRDIKRHLCLELVRGVPLFDQMDERMLDAICERLKPALCTQGTYLVREGDPVNEMLFIIRGHLDSYTTNGGRDGFFNSCRIGPGDFCGEELLTWALDPRPSVILPSSTRTVNAVSEVEAFALIAEDLKFVASQFRRLHSKQLRHKFRFYSHQWRTWAACFVQAAWRRHKKRKEAAELRAKENLMATSETERETKFGTGFVVYGTRVARSTRKGVVSSLQKPTEPDFSDE 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi206g00004 689 PRINTS EAG/ELK/ERG potassium channel family signature 141 150 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vivi206g00004 689 PRINTS EAG/ELK/ERG potassium channel family signature 258 268 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vivi206g00004 689 PRINTS EAG/ELK/ERG potassium channel family signature 441 448 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vivi206g00004 689 PRINTS EAG/ELK/ERG potassium channel family signature 391 400 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vivi206g00004 689 PRINTS EAG/ELK/ERG potassium channel family signature 347 364 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vivi206g00004 689 Gene3D Helix hairpin bin 406 469 - -
Vivi206g00004 689 ProSiteProfiles cAMP/cGMP binding motif profile. 478 563 IPR000595 -
Vivi206g00004 689 MobiDBLite consensus disorder prediction 1 17 - -
Vivi206g00004 689 Pfam Cyclic nucleotide-binding domain 501 587 IPR000595 -
Vivi206g00004 689 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 51 686 - -
Vivi206g00004 689 FunFam Cyclic nucleotide-gated ion channel 1 405 469 - -
Vivi206g00004 689 SUPERFAMILY cAMP-binding domain-like 408 604 IPR018490 -
Vivi206g00004 689 Gene3D - 89 404 - -
Vivi206g00004 689 ProSiteProfiles IQ motif profile. 614 642 IPR000048 GO:0005515
Vivi206g00004 689 SMART cnmp_10 478 609 IPR000595 -
Vivi206g00004 689 SUPERFAMILY Voltage-gated potassium channels 77 400 - -
Vivi206g00004 689 MobiDBLite consensus disorder prediction 1 24 - -
Vivi206g00004 689 CDD CAP_ED 478 609 IPR000595 -
Vivi206g00004 689 MobiDBLite consensus disorder prediction 669 689 - -
Vivi206g00004 689 FunFam Cyclic nucleotide-gated ion channel 1 476 594 - -
Vivi206g00004 689 Pfam Ion transport protein 86 405 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vivi206g00004 689 Gene3D Jelly Rolls 476 596 IPR014710 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi206g00004 47 689 Ion Channels AT2G28260 74.379 0.0 1009
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi206g00004 K05391 - gmx:100786868 1140.95