Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi202g00019 ATGTCTGACCATGTTGCTGAGAGAAAGCAAGAGCTTCAGCTATTCACTGCACCACAACCAGAAATCGAAACACCAAACACCAATACCACCGTAGATAACAATCATCATGTGTCTTCCTCCACTGCCTCTCGCCGCCCCCGGGGGCGTCCTCTTGGCTCTAGGAACAAACCTAAGATGCCTGTCATAGTAACACATGACAATACTAATGTTGTAAGTTCTCATGTCCTTGAGATTAGGGCTGGAGACGACATATCAAAAAGTGTCTTTGATTACGCTCACCGTCAGGAGAGGGGCATATGCATTCTCAATGGTGATGGATTGGTGACACATGTTAGACTTCGGTTACCCACAGGAAGAGTTGCAACCCTACAAGGAAGGTTTGAGATTCTTTTGATATCTGGGACAGTTTTTCCAACGCCAACACCGATGAATGTTGGAGGATTGACAGTTTACTTATCTGGAATAAATGAACAAGTGATTGGGGGAAGTGTGATCCCCCCTTTGGTGGCTTCAAGTCTAGTGACTTTGACGGTTGCTTCCTTTGCAAACACTGCACCAGAAAAACTTTCTTCGGTGGTAGTTGATAAAAAAGAACATCGCCTTCCATGCATCGATGGAGTTGGACAAGTGAGAGTAAGTGATCATGACTTGTCCAATGCTGGAGATTCAACATCTGGAATGAGAAACATGATGAGTAGCAACATCAGTTATCCATCATCCTCTACTCAAGATCATATATTTGGATGGGAGACTACTGCAACCGTAACTCCCCCACCCAAACATCCCCGTTTCTAG 795 0.4491 MSDHVAERKQELQLFTAPQPEIETPNTNTTVDNNHHVSSSTASRRPRGRPLGSRNKPKMPVIVTHDNTNVVSSHVLEIRAGDDISKSVFDYAHRQERGICILNGDGLVTHVRLRLPTGRVATLQGRFEILLISGTVFPTPTPMNVGGLTVYLSGINEQVIGGSVIPPLVASSLVTLTVASFANTAPEKLSSVVVDKKEHRLPCIDGVGQVRVSDHDLSNAGDSTSGMRNMMSSNISYPSSSTQDHIFGWETTATVTPPPKHPRF 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi202g00019 264 ProSiteProfiles PPC domain profile profile. 68 202 IPR005175 -
Vivi202g00019 264 Pfam Plants and Prokaryotes Conserved (PCC) domain 73 182 IPR005175 -
Vivi202g00019 264 SUPERFAMILY AF0104/ALDC/Ptd012-like 69 189 - -
Vivi202g00019 264 CDD DUF296 74 181 IPR005175 -
Vivi202g00019 264 Gene3D - 72 200 - -
Vivi202g00019 264 MobiDBLite consensus disorder prediction 1 60 - -
Vivi202g00019 264 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 32 204 IPR014476 GO:0003680
Vivi202g00019 264 MobiDBLite consensus disorder prediction 17 46 - -
Vivi202g00019 264 PIRSF ESCAROLA 1 261 IPR014476 GO:0003680
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi202g00019 37 189 AT-hook Motif Nuclear Localized (AHL) Family AT1G76500 53.049 7.64e-44 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi202g00019 - - psat:127088334 455.677