Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi200g00012 ATGCAAAAAATATCTCATGACGGCGGCTCCGGTCGCCGGACGGTTGTTGTCGGAGTCAAAATGGATTCTCCGAGTAAAGAGCTTCTCACTTGGGCCTTAGTTAAGGTTGCTCAACCTGGTGATCTCGTTGTTGCTCTGCATGTTCTTGGCACCCATGAAATTATGAATGGAGATGGGAAATCGTCGTTGCTTTCTCTTGTTAAAGCGTTTGACTCTGTTCTTAATGTTTATGAAGGATTCTGTAATTTGAAGCAGGTGGATCTTAAGCTGAAAATTTGCCGTGGTTCATCGGTGAAGAAGATTTTGGTGCGAGAAGCGAATGTTTATTGTGCAACTCATGTTATTGTTGGGAGTGTTCATGGCTTCCATAGAATAAGAACATCTAGCTCTGTGGCTAAGTACTGTGCTGGAAAGATAGCTCATGATTGTTGTGTTCTTGCTGTTAATAATGGGAAAGTTGTGTTCAAGCGTGGTAGATTGGAAGAATCAAGTGTTGTTGATGTACAAGGGTTTGATTGTCATCGTGAAGATGGTTTGCTTGGTTCGATTCGTTCGACACTTGGTAGTGATAAGAAAGTATCGAATGATGATGCTGTTAAGGGAACCAAACGGGTTTCGGATCATAGTTTAGGTAAGATTTTACTTGATTCTACGGAGAAAGTAAGAGATCGAAGTTGTTTGATTTGCGGGGCGATGGAAGAGACTTCTTGCCATCAATGTGGAGAAGAGCCTTCGAAAGCATCTGAAGGCTCTTCTTCTCGTGATGGTGAGAAAGAGAATTCTTTGGCAATAGTACCCGTAGTGACAACTGATGCAGGACAACAACCGGAATTGAAACCCGGTTGGCCGCTACTTCACCGGAAGATTTTATCAGAAAGACGATTACCTGTTACACCGTTCAAGCGCAACCAGGTCTCTGTCGTCCAGTGGGCAATGAGCTTGCCGAATAGAGACGTATCAAATGGCGGCGTTGATCATGGTAAACAACTTAGAATTTGTGATCAAGGTTGGGATCAATCGACGGCATTAAATAGTGAAAGCCGCGCTCTTGTTCCGGTAGATTCGGAAATAGGGAAAACATATTCATTGCCTGAAAGCACTTTAAAAATCATTCCTAAAGAATTGGAGGGCCTACCTGAGAAATACTCATCGACTTGTAGGTTGTTCGAGTACCAAGAACTTGTATCCGCGACATCAAATTTTTCGCCTGAAAACTTGATCGGTAAAGGAGGAAGTAGTTTGGTTTATCGAGGCTGCCTTCGCGATGGCAAGGAACTTGCTGTCAAGATCCTAAAGCCTTCTTATGATGTTTTGAAAGAGTTTCTTTTGGAAATCGAAATCATTACTACATTGCATCAAAAAAACATTATTACACTCCTCGGATTCTGCTTCGAGAACGGAAAGCTTCTTCTCGTCTATGATTTCTTATCAAGAGGAAGCCTTGAAGAGAACATTCACGGTACTAAGAAAAATCCTCGCGAGTTCGGTTGGGCACAGAGATATAAGGTTGCTGCAGGTGTTGCCGAGGCTTTAGTTTATCTGCATTGTAAAGATGATCATCCTGTGATCCATCGGGATGTTAAATCCTCTAATGTATTACTATCGGAAGATTTCGAACCTCGGTTATCTGATTTTGGATTGGCTACGTGGGCGTCAACCTCGTCATCGTATATAACGTGCACGGATGTTGCCGGAACCTTCGGTTATATGGCTCCTGAATACTTCATGTACGGCAAAGTAAGCGATAAGATCGATGTCTATGCATTCGGAGTCGTGCTTCTTGAGCTTCTTTCAGGGAGAAAGCCCATAAGTGTCGATTATCCAAAAGGTCAACAGAGTCTCGTTATGTGGGCTACTCCACTTCTAAGTGATGGAAAGGTGTCACAATTGTTAGATCCTAGTTTGGGTGATAAGTATGATCATGAGGAGATGGAAAGAATGGTTTTAGCAGCCACTCTTTGCATCAAACGTGCTCCAAAAGCTAGGCCTCAAATGAGCATTGTATCAAAGCTCCTTAGAGGCGACGATGATGCGGTCAAGTGGGCAAAATTAGAAGTCAATGTCTTGGAAGCGCGCGAAAAGCTCGAAGACGAAGAATTTCCACCTAGTAATCTACTAAAGTCGCATATTAATCTTGCACTACTTGATGTGGAAGATGACTCACTCTCCATGTCTAGTGTTGAGCAAAGTGTGTCATTAGAGGAATACTTGAGAGGAAGATGGAGTAGAGCATCAAGTTTTGATTGA 2247 0.4281 MQKISHDGGSGRRTVVVGVKMDSPSKELLTWALVKVAQPGDLVVALHVLGTHEIMNGDGKSSLLSLVKAFDSVLNVYEGFCNLKQVDLKLKICRGSSVKKILVREANVYCATHVIVGSVHGFHRIRTSSSVAKYCAGKIAHDCCVLAVNNGKVVFKRGRLEESSVVDVQGFDCHREDGLLGSIRSTLGSDKKVSNDDAVKGTKRVSDHSLGKILLDSTEKVRDRSCLICGAMEETSCHQCGEEPSKASEGSSSRDGEKENSLAIVPVVTTDAGQQPELKPGWPLLHRKILSERRLPVTPFKRNQVSVVQWAMSLPNRDVSNGGVDHGKQLRICDQGWDQSTALNSESRALVPVDSEIGKTYSLPESTLKIIPKELEGLPEKYSSTCRLFEYQELVSATSNFSPENLIGKGGSSLVYRGCLRDGKELAVKILKPSYDVLKEFLLEIEIITTLHQKNIITLLGFCFENGKLLLVYDFLSRGSLEENIHGTKKNPREFGWAQRYKVAAGVAEALVYLHCKDDHPVIHRDVKSSNVLLSEDFEPRLSDFGLATWASTSSSYITCTDVAGTFGYMAPEYFMYGKVSDKIDVYAFGVVLLELLSGRKPISVDYPKGQQSLVMWATPLLSDGKVSQLLDPSLGDKYDHEEMERMVLAATLCIKRAPKARPQMSIVSKLLRGDDDAVKWAKLEVNVLEAREKLEDEEFPPSNLLKSHINLALLDVEDDSLSMSSVEQSVSLEEYLRGRWSRASSFD 748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi200g00012 748 PANTHER OS08G0249100 PROTEIN 213 680 IPR046958 -
Vivi200g00012 748 Gene3D Phosphorylase Kinase; domain 1 373 475 - -
Vivi200g00012 748 ProSitePatterns Serine/Threonine protein kinases active-site signature. 522 534 IPR008271 GO:0004672|GO:0006468
Vivi200g00012 748 FunFam Putative receptor-like serine/threonine-protein kinase 476 688 - -
Vivi200g00012 748 Pfam Protein kinase domain 404 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi200g00012 748 ProSitePatterns Protein kinases ATP-binding region signature. 407 429 IPR017441 GO:0005524
Vivi200g00012 748 SMART serkin_6 401 644 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi200g00012 748 Pfam Universal stress protein family 12 143 IPR006016 -
Vivi200g00012 748 FunFam probable receptor-like serine/threonine-protein kinase At5g57670 12 149 - -
Vivi200g00012 748 SUPERFAMILY Protein kinase-like (PK-like) 382 671 IPR011009 -
Vivi200g00012 748 FunFam probable receptor-like serine/threonine-protein kinase At5g57670 370 475 - -
Vivi200g00012 748 ProSiteProfiles Protein kinase domain profile. 401 672 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi200g00012 748 Gene3D HUPs 12 150 IPR014729 -
Vivi200g00012 748 MobiDBLite consensus disorder prediction 239 259 - -
Vivi200g00012 748 Gene3D Transferase(Phosphotransferase) domain 1 476 688 - -
Vivi200g00012 748 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 13 148 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi200g00012 388 668 Trihelix Transcription Factor Family AT1G68690 47.038 1.06e-75 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Vivi200g00012 Pkinase 2e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi200g00012 - - pcin:129303222 934.095