Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi200g00004 ATGAATACCGAGGAAGGAATGGGCAGTCCTGATGATTATACTGAATGTAGTGGAGGAGTTCAGGGTTTGAAACTCGAAGCTGTTTCTGATGAGGTGCCAATTTTAAATGGGGATGGTGTTGCTGAAGAGGCTCGGGGCTTGAAAAGTGAAGCCGTGAGTGATGATTGTTGTTTTGATATGGGAGCTGAGGAAGGAGTGAGGAGTCCTGGTGACACTAAATGTGCTGAAGGAATTCGGTGTTTGAAACGCAAAGCCATTTCTGATGAGGTGCCAATTTCCAATGGGAATGGTGTTGCTGAAGAGGTTCGACATTTGAAAAGTGAAGCCGTGAATGATGGGGTGGTATTTGCCATCGGAAATGGTGTTGCTGATGTGGGTGGGGATTTGAAAAGTGAAGTATTGAATAATGGGGTAAATGGGAATGGTGTATTTGAAGAGGCTCGACACTCGAAAAGTGAAGCTATGAGCAATGGGGTGGTATTTGGCTATGGGAATGAAGTTACTGATGTGGCTAGGGTTTTGAAAAGTGAAGCATCAAATAGTGCGTTTAATGGAAATGGTGTATTTGAAGAGGATCGGCACTTGAAAAGTGAAGACCTGAACGATGGGGTGGTATTTGCCAATGGAAATGGTGTTATTGATGTGGCTGGGGTTTTGGAAAGTAAAATATCGAGTAACGGGGTAAATGGAAATGGTGTATTTGTAGAGGATCGACACTCGAAAAGTGAAGCCACGAATGATGGGGTGGTACTAGCCAATGGAAATGGTATTACTGATGTGGCTGGGGATTTGAAAAGTGAAGTATTGAATAGTGGGGTGAATGAAAATGGTGTTATTGAAGAGGGCGGAGTTTTGAAAAGTGAACGCGTTAGCAATGGGGTGCCAATTGCAGATGGGTTTGATTCTGGCGAAGGGGGCTCTGGTGGACTTACTTGTCTTCTAACTTACAAGAGGCGGAAATATGATAAGTCAAGCTCAAAAGGCAAAGCTAAGGAGGATTGGAGAAAATGTGTGGAAACTACAAGTCATATGGGAGACCAGGCTGTGAAGGAACCCTTTGATGCAACTTTGGGCAATACTGAAAATGATTGTGCCCATAGACATTGGGGGAATGATGTACTAAAGCATTCATATCAGTCATTAGGCAATGTCGATGGTGGCATAGAGGGGTGCATAGGGCAAGCACTAGTTCAGCATCCTCAAAGAAGTTGTGCCACCACAGTTATGCAGGGAACTTCTAAAATTGACAAAGATGGACATGGATTTTCTTCACAATTTGACTGCTTATCTCACAGACCACAGGCTGAAGCTAATGGGCACACACATGTCAAGCAAAATGGATCTTCTAGTGAACCCCATAACCATGGTGGGACTGAGAAGTGTCAGCGCTTGCTCCACGATATATTAAACTCAGAAAAATTCAATTCATTACGCAATACTTTACTTGAAAATTTCAAAGGAATAGAGCCTGAAAGCGTATTGGATTTTAGTATCGTGAACACAAGGATGAAGCAGAAAACTTATGAACCATCACCTGCACTTTTCTTGTCAGATATTCAACAGGTCTGGAGAAAGCTTCAAGATGTTGGTAACGAGATCTCTGCTCTTTCTAAAAGCCTCTCTATCATGTCAACAACTTTCTACTCTGAACTGGTTGGAGTTTCAGCGCAGAGCACATTTGAAGATGAAAAACAAATTGAATTGGACTCACACATGAAACCGGAACAGACAGAAGAATGCACTACCTATAAAATTTGCTGTTGCAGTCGTTGTGGAGAAAGGGCAGATGGTACAGACTGTTTGGTGTGCGATTCATGTGAGAAGGTGTACCATTTGTCCTGTATTGAGCCTGCAGTGAAAGAAATACCTCACAAAAGCTGGTATTGTACTAATTGCACCACCAGTGGCTTTGGATCTCCGCATGAGAATTGTGTAGTATGTACGAGGTTGAATGACGCAATGACTCCGAAGAAAATAATTGGTGATGAAAGCCTCACTACATATGAGGAAACACTTAATGGATTTGAAGAGAAATCAAATTACAGCTATGATGGGGTTCAAGTATCTAAAGGTGGGGAAAAAACACTGGATTGCAAAGTGTGCGGATATGAAGTCCTAGTTGATGGTGAAAAAATTAGAATATGTGGTCACCCTTTTTGCCCAAGTAATTACTACCATGTAAGGTGTTTGACAAGCAAGCAATTAAATTCATATGGTCGTTGGTGGTACTGCCCTTCTTGTTTATGCCAAGTTTGCCTCGTCGATCATGATGACGATCAAATTATCCTTTGTGATGGCTGTGATCATGCATATCACATCCATTGCATGAAGCCTCCTCTATCTTCTATTCCAAAAGGGAAATGGTTCTGCAAAAAATGTGATGCCGGAATCAAGGCAATATCCCAGGCAAAAAGGGCGTATGAGAATAACAAGCTGAGAATCGGTGAAAATGTTTCAAAGCCAAGAGGTAATAATGAAAACAATTGCAACAATAAATGTGTAGAAGAATTGGAAAGTGTTGGAGGAATGGACATGCTTTTAACTGCCGCCAATTCTCTGAATTTCGAAGATAATTTAACCGAAAACCAGTTTGAGTAG 2598 0.4184 MNTEEGMGSPDDYTECSGGVQGLKLEAVSDEVPILNGDGVAEEARGLKSEAVSDDCCFDMGAEEGVRSPGDTKCAEGIRCLKRKAISDEVPISNGNGVAEEVRHLKSEAVNDGVVFAIGNGVADVGGDLKSEVLNNGVNGNGVFEEARHSKSEAMSNGVVFGYGNEVTDVARVLKSEASNSAFNGNGVFEEDRHLKSEDLNDGVVFANGNGVIDVAGVLESKISSNGVNGNGVFVEDRHSKSEATNDGVVLANGNGITDVAGDLKSEVLNSGVNENGVIEEGGVLKSERVSNGVPIADGFDSGEGGSGGLTCLLTYKRRKYDKSSSKGKAKEDWRKCVETTSHMGDQAVKEPFDATLGNTENDCAHRHWGNDVLKHSYQSLGNVDGGIEGCIGQALVQHPQRSCATTVMQGTSKIDKDGHGFSSQFDCLSHRPQAEANGHTHVKQNGSSSEPHNHGGTEKCQRLLHDILNSEKFNSLRNTLLENFKGIEPESVLDFSIVNTRMKQKTYEPSPALFLSDIQQVWRKLQDVGNEISALSKSLSIMSTTFYSELVGVSAQSTFEDEKQIELDSHMKPEQTEECTTYKICCCSRCGERADGTDCLVCDSCEKVYHLSCIEPAVKEIPHKSWYCTNCTTSGFGSPHENCVVCTRLNDAMTPKKIIGDESLTTYEETLNGFEEKSNYSYDGVQVSKGGEKTLDCKVCGYEVLVDGEKIRICGHPFCPSNYYHVRCLTSKQLNSYGRWWYCPSCLCQVCLVDHDDDQIILCDGCDHAYHIHCMKPPLSSIPKGKWFCKKCDAGIKAISQAKRAYENNKLRIGENVSKPRGNNENNCNNKCVEELESVGGMDMLLTAANSLNFEDNLTENQFE 865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi200g00004 865 MobiDBLite consensus disorder prediction 439 455 - -
Vivi200g00004 865 SUPERFAMILY FYVE/PHD zinc finger 748 798 IPR011011 -
Vivi200g00004 865 SMART PHD_3 749 794 IPR001965 -
Vivi200g00004 865 SMART PHD_3 697 748 IPR001965 -
Vivi200g00004 865 SMART PHD_3 587 633 IPR001965 -
Vivi200g00004 865 ProSitePatterns Zinc finger PHD-type signature. 744 793 IPR019786 -
Vivi200g00004 865 FunFam PHD finger protein EHD3 isoform A 479 636 - -
Vivi200g00004 865 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 691 801 IPR013083 -
Vivi200g00004 865 MobiDBLite consensus disorder prediction 439 458 - -
Vivi200g00004 865 SUPERFAMILY FYVE/PHD zinc finger 575 633 IPR011011 -
Vivi200g00004 865 Gene3D - 482 635 - -
Vivi200g00004 865 ProSiteProfiles Zinc finger PHD-type profile. 585 635 IPR019787 -
Vivi200g00004 865 CDD PHD1_Lid2p_like 749 793 - -
Vivi200g00004 865 PANTHER OS02G0192300 PROTEIN 567 660 - -
Vivi200g00004 865 ProSiteProfiles Zinc finger PHD-type profile. 746 796 IPR019787 -
Vivi200g00004 865 Pfam PHD-finger 749 794 IPR019787 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi200g00004 748 815 C2H2 Transcription Factor Family AT3G01460 42.647 6.34e-14 74.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vivi200g00004 PHD 2e-12 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi200g00004 - - psat:127082741 1357.81