Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi200g00003 ATGAATACCGAGGAAGGAATGGGCAGTCCTGATGATTATACTGAATGTAGTGGAGGAGTTCAGGGTTTGAAACTCGAAGCTGTTTCTGATGAGGTGCCAATTTTAAATGGGGATGGTGTTGCTGAAGAGGCTCGGGGCTTGAAAAGTGAAGCCGTGAGTGATGATTGTTGTTTTGATATGGGAGCTGAGGAAGGAGTGAGGAGTCCTGGTGACACTAAATGTGCTGAAGGAATTCGGTGTTTGAAACGCAAAGCCATTTCTGATGAGGTGCCAATTTCCAATGGGAATGGTGTTGCTGAAGAGGTTCGACATTTGAAAAGTGAAGCCGTGAATGATGGGGTGGTATTTGCCATCGGAAATGGTGTTGCTGATGTGGGTGGGGATTTGAAAAGTGAAGTATTGAATAATGGGGTAAATGGGAATGGTGTATTTGAAGAGGCTCGACACTCGAAAAGTGAAGCTATGAGCAATGGGGTGGTATTTGGCTATGGGAATGAAGTTACTGATGTGGCTAGGGTTTTGAAAAGTGAAGCATCAAATAGTGCGTTTAATGGAAATGGTGTATTTGAAGAGGATCGGCACTTGAAAAGTGAAGACCTGAACGATGGGGTGGTATTTGCCAATGGAAATGGTGTTATTGATGTGGCTGGGGTTTTGGAAAGTAAAATATCGAGTAACGGGGTAAATGGAAATGGTGTATTTGTAGAGGATCGACACTCGAAAAGTGAAGCCACGAATGATGGGGTGGTACTAGCCAATGGAAATGGTATTACTGATGTGGCTGGGGATTTGAAAAGTGAAGTATTGAATAGTGGGGTGAATGAAAATGGTGTTATTGAAGAGGGCGGAGTTTTGAAAAGTGAACGCGTTAGCAATGGGGTGCCAATTGCAGATGGGTTTGATTCTGGCGAAGGGGGCTCTGGTGGACTTACTTGTCTTCTAACTTACAAGAGGCGGAAATATGATAAGTCAAGCTCAAAAGGCAAAGCTAAGGAGGATTGGAGAAAATGTGTGGAAACTACAAGTCATATGGGAGACCAGGCTGTGAAGGAACCCTTTGATGCAACTTTGGGCAATACTGAAAATGATTGTGCCCATAGACATTGGGGGAATGATGTACTAAAGCATTCATATCAGTCATTAGGCAATGTCGATGGTGGCATAGAGGGGTGCATAGGGCAAGCACTAGTTCAGCATCCTCAAAGAAGTTGTGCCACCACAGTTATGGGAACTTCTAAAATTGACAAAGATGGACATGGATTTTCTTCACAATTTGACTGCTTATCTCACAGACCACAGGCTGAAGCTAATGGGCACACACATGTCAAGCAAAATGGATCTTCTAGTGAACCCCATAACCATGGTGGGACTGAGAAGTGTCAGCGCTTGCTCCACGATATATTAAACTCAGAAAAATTCAATTCATTACGCAATACTTTACTTGAAAATTTCAAAGGAATAGAGCCTGAAAGCGTATTGGATTTTAGTATCGTGAACACAAGGATGAAGCAGAAAACTTATGAACCATCACCTGCACTTTTCTTGTCAGATATTCAACAGGTCTGGAGAAAGCTTCAAGATGTTGGTAACGAGATCTCTGCTCTTTCTAAAAGCCTCTCTATCATGTCAACAACTTTCTACTCTGAACTGGTTGGAGTTTCAGCGCAGAGCACATTTGAAGATGAAAAACAAATTGAATTGGACTCACACATGAAACCGGAACAGACAGAAGAATGCACTACCTATAAAATTTGCTGTTGCAGTCGTTGTGGAGAAAGGGCAGATGGTACAGACTGTTTGGTGTGCGATTCATGTGAGAAGGTGTACCATTTGTCCTGTATTGAGCCTGCAGTGAAAGAAATACCTCACAAAAGCTGGTATTGTACTAATTGCACCACCAGTGGCTTTGGATCTCCGCATGAGAATTGTGTAGTATGTACGAGGTTGAATGACGCAATGACTCCGAAGAAAATAATTGGTGATGAAAGCCTCACTACATATGAGGAAACACTTAATGGATTTGAAGAGAAATCAAATTACAGCTATGATGGGGTTCAAGTATCTAAAGGTGGGGAAAAAACACTGGATTGCAAAGTGTGCGGATATGAAGTCCTAGTTGATGGTGAAAAAATTAGAATATGTGGTCACCCTTTTTGCCCAAGTAATTACTACCATGTAAGGTGTTTGACAAGCAAGCAATTAAATTCATATGGTCGTTGGTGGTACTGCCCTTCTTGTTTATGCCAAGTTTGCCTCGTCGATCATGATGACGATCAAATTATCCTTTGTGATGGCTGTGATCATGCATATCACATCCATTGCATGAAGCCTCCTCTATCTTCTATTCCAAAAGGGAAATGGTTCTGCAAAAAATGTGATGCCGGAATCAAGGCAATATCCCAGGCAAAAAGGGCGTATGAGAATAACAAGCTGAGAATCGGTGAAAATGTTTCAAAGCCAAGAGGTAATAATGAAAACAATTGCAACAATAAATGTGTAGAAGAATTGGAAAGTGTTGGAGGAATGGACATGCTTTTAACTGCCGCCAATTCTCTGAATTTCGAAGATAATTTAACCGAAAACCAGTTTGAGTAG 2595 0.4181 MNTEEGMGSPDDYTECSGGVQGLKLEAVSDEVPILNGDGVAEEARGLKSEAVSDDCCFDMGAEEGVRSPGDTKCAEGIRCLKRKAISDEVPISNGNGVAEEVRHLKSEAVNDGVVFAIGNGVADVGGDLKSEVLNNGVNGNGVFEEARHSKSEAMSNGVVFGYGNEVTDVARVLKSEASNSAFNGNGVFEEDRHLKSEDLNDGVVFANGNGVIDVAGVLESKISSNGVNGNGVFVEDRHSKSEATNDGVVLANGNGITDVAGDLKSEVLNSGVNENGVIEEGGVLKSERVSNGVPIADGFDSGEGGSGGLTCLLTYKRRKYDKSSSKGKAKEDWRKCVETTSHMGDQAVKEPFDATLGNTENDCAHRHWGNDVLKHSYQSLGNVDGGIEGCIGQALVQHPQRSCATTVMGTSKIDKDGHGFSSQFDCLSHRPQAEANGHTHVKQNGSSSEPHNHGGTEKCQRLLHDILNSEKFNSLRNTLLENFKGIEPESVLDFSIVNTRMKQKTYEPSPALFLSDIQQVWRKLQDVGNEISALSKSLSIMSTTFYSELVGVSAQSTFEDEKQIELDSHMKPEQTEECTTYKICCCSRCGERADGTDCLVCDSCEKVYHLSCIEPAVKEIPHKSWYCTNCTTSGFGSPHENCVVCTRLNDAMTPKKIIGDESLTTYEETLNGFEEKSNYSYDGVQVSKGGEKTLDCKVCGYEVLVDGEKIRICGHPFCPSNYYHVRCLTSKQLNSYGRWWYCPSCLCQVCLVDHDDDQIILCDGCDHAYHIHCMKPPLSSIPKGKWFCKKCDAGIKAISQAKRAYENNKLRIGENVSKPRGNNENNCNNKCVEELESVGGMDMLLTAANSLNFEDNLTENQFE 864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi200g00003 864 Gene3D - 481 634 - -
Vivi200g00003 864 ProSiteProfiles Zinc finger PHD-type profile. 745 795 IPR019787 -
Vivi200g00003 864 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 690 800 IPR013083 -
Vivi200g00003 864 SUPERFAMILY FYVE/PHD zinc finger 747 797 IPR011011 -
Vivi200g00003 864 SUPERFAMILY FYVE/PHD zinc finger 574 632 IPR011011 -
Vivi200g00003 864 ProSitePatterns Zinc finger PHD-type signature. 743 792 IPR019786 -
Vivi200g00003 864 PANTHER OS02G0192300 PROTEIN 566 659 - -
Vivi200g00003 864 MobiDBLite consensus disorder prediction 438 454 - -
Vivi200g00003 864 CDD PHD1_Lid2p_like 748 792 - -
Vivi200g00003 864 SMART PHD_3 748 793 IPR001965 -
Vivi200g00003 864 SMART PHD_3 696 747 IPR001965 -
Vivi200g00003 864 SMART PHD_3 586 632 IPR001965 -
Vivi200g00003 864 MobiDBLite consensus disorder prediction 438 457 - -
Vivi200g00003 864 FunFam PHD finger protein EHD3 isoform A 478 635 - -
Vivi200g00003 864 ProSiteProfiles Zinc finger PHD-type profile. 584 634 IPR019787 -
Vivi200g00003 864 Pfam PHD-finger 748 793 IPR019787 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi200g00003 747 814 C2H2 Transcription Factor Family AT3G01460 42.647 6.38e-14 74.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vivi200g00003 PHD 2e-12 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi200g00003 - - psat:127082741 1351.27