Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g08838 ATGGCTTCTGCTAGCCTTGGTAGTGGAAATGGAAATGGTGGTGTTGGTAGTTCTAGGTCTGCTTTGAGAGGTTCGTCGAGTTCCGTTGATTGGCTTGGGAGAGAGATGCTTGAGATGAGGCTCAGAGACAAGGTTGAGCATGGCCATGATGATGATGATGATGATGACAGAGAGAGTGAGCCTGATATCATTGATGGTGTGGGTGCTGAAACAGGACATGTAATACGAACCAGCATTGGTGGACGAAATGGTCAATCTAAACAGAATGTTAGTTATATCGCGGAACACGTAGTAGGGACGGGCTCTTTTGGCACTGTTTTTCAAGCAAAATGTAGAGAAACAGGAGAGATTGTTGCCATCAAGAAGGTTCTCCAGGACAAGCGTTACAAGAATAGAGAGCTACAGATTATGCAAATGCTGGACCATCCAAATATTGTCGCCCTGAGGCATTGTTTCTTTTCGACGACCGACAAAGAAGAGCTTTACTTGAATCTTGTACTAGAATACGTTCCTGAAACCGTGAATCGTATTGCGAGGAACTATAGCAGGATTAACCAGCGAATGCCTTTAATATACGTGAAACTTTATACGTACCAGATATGCAGGGCCCTTGCTTACATACATAATTGCATTGGAATTTGTCATCGTGACATCAAACCTCAGAACCTACTTGTAAACCCACACACTCATCAGCTGAAGCTATGTGATTTTGGGAGTGCAAAAGTGTTGGTGAAAGGAGAACCCAATGTTTCATATATTTGTTCAAGATACTATCGTGCCCCAGAACTTATATTTGGTGCCACTGAATATACCACTGCCATAGATATATGGTCAACTGGTTGTGTAATGGCTGAATTACTTCTTGGACAGCCCTTGTTTCCTGGAGAGAGTGGAGTTGATCAGCTGGTTGAAATCATCAAGGTTTTGGGAACTCCTACAAGGGAAGAGATAAAGTGCATGAACCCAAATTATACTGAATTTAAGTTTCCGCAGATAAAACCTCATCCATGGCACAAGGTCTTTCAGAAACGTTTACCTCCTGAAGCGGTGGATCTTGTCTGTAGGTTCTTTCAGTACTCTCCTAATTTGAGATGCACTGCTTTCGAAGCTTGCATCCACCCCTTCTTTGATGAATTGAGGGACCCAAGCACCCGCCTTCCCAATGGCCGCCCACTGCCTCCGCTGTTTAACTTCAAACCTCAGGAACTTTCTGGTATTCCACCTGATGTCATCAACCGGCTTATTCCAGAACATGCCCGGAAACAGAACTTATTTATGGCTTTGCACACCTAG 1293 0.4393 MASASLGSGNGNGGVGSSRSALRGSSSSVDWLGREMLEMRLRDKVEHGHDDDDDDDRESEPDIIDGVGAETGHVIRTSIGGRNGQSKQNVSYIAEHVVGTGSFGTVFQAKCRETGEIVAIKKVLQDKRYKNRELQIMQMLDHPNIVALRHCFFSTTDKEELYLNLVLEYVPETVNRIARNYSRINQRMPLIYVKLYTYQICRALAYIHNCIGICHRDIKPQNLLVNPHTHQLKLCDFGSAKVLVKGEPNVSYICSRYYRAPELIFGATEYTTAIDIWSTGCVMAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKPHPWHKVFQKRLPPEAVDLVCRFFQYSPNLRCTAFEACIHPFFDELRDPSTRLPNGRPLPPLFNFKPQELSGIPPDVINRLIPEHARKQNLFMALHT 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g08838 430 ProSitePatterns Serine/Threonine protein kinases active-site signature. 213 225 IPR008271 GO:0004672|GO:0006468
Vivi1g08838 430 ProSitePatterns Protein kinases ATP-binding region signature. 98 122 IPR017441 GO:0005524
Vivi1g08838 430 ProSiteProfiles Protein kinase domain profile. 92 376 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g08838 430 MobiDBLite consensus disorder prediction 42 67 - -
Vivi1g08838 430 Pfam Protein kinase domain 94 376 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g08838 430 FunFam Glycogen synthase kinase-3 beta 76 171 - -
Vivi1g08838 430 SMART serkin_6 92 376 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g08838 430 SUPERFAMILY Protein kinase-like (PK-like) 91 403 IPR011009 -
Vivi1g08838 430 CDD STKc_GSK3 87 379 IPR039192 -
Vivi1g08838 430 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 58 422 - -
Vivi1g08838 430 FunFam Shaggy-related protein kinase kappa 172 420 - -
Vivi1g08838 430 Gene3D Transferase(Phosphotransferase) domain 1 172 420 - -
Vivi1g08838 430 Gene3D Phosphorylase Kinase; domain 1 77 171 - -
Vivi1g08838 430 MobiDBLite consensus disorder prediction 1 27 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g08838 Vivi-Chr1 252143565 252149997 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g08838 98 384 Core Cell Cycle Gene Families AT1G76540 35.254 1.23e-57 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Vivi1g08838 Pkinase 1.2e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g08838 K03083 - gmx:100799387 797.349