Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g08822 ATGAATGAAGGATTGAGAATTATGGAAGAAGGGAAAGAGAAATTGAATTTGGAGATGGAGAGTCGAAAGGAGAAGCGAAAGGCAATGAAGAAAATGAAGCGAAAGGAGAGAAGGAAGGAGATTGCAGAGATGGAGCGATTAGAGGAAGAAGCGCGTCTCAACGATCCCGAAGAGCAGAGGAAGAGGATGCTTTTGGAGCAGCAAGAGGCCGAGAGAATCGAAAGGGATAGGATCGCTTTCGAAGAGAGGGAGAAGGCCTGGATCATCAAACAACAAGAAGCTCAACTTCTCGAGCAGGAAAAATCTCAACAACAACAACACGATAGCACTGATAATAACGACGTCGTTGAAGAAGAAGAAGCAGAAGAAGAAGATGAAGACGGTCCTCCGGAGATTATTTGGCTAGGAAATGAAATAATCATCAAGAAGAAAAAGCCGAACCCTAATTTCCTCCTCCACCACCAGGAGCATGATCATGATCGTGATGATGATGGCGCTGGTACTGATAATAATAGACCTACATCAAATCCCTTTCCACCGGAATCTCCCTCTCAATCTCGCTCTTCTCGCTCCAATTCAGCGGTTATAGAGAATGTTGCTCAACAAATACCTAATTTCGGAACTGAACTGGATAAAGCTCATTGTCCTTTTCATCTTAAAACGGGAGTGTGTAGATTTGGTGATCGTTGTAGCAGGGTTCATTTCTACCCCGATAAGTCCTGCACCTTTGTCATCAAAAATATGTATAATGGTCCTGGCCTTGCTTGGGAACAAGATGAAGGCCTTGAGTATACAGATGAGGAGATTCAACGTTGTTTCGAAGAGTTTTATGAGGATGTTCATACAGAGTTCCTGAAGTTTGGAGAAATTGTGAACTTCAAGGTGTGTAGAAATGGTTCATTTCACTTGCGAGGAAATGTCTATGTACAGTACAAGTTGTTGGATTCTGCTCTGCTTGCTTATAACGCAATTAATGGTCGCTATTTCGCTGGGAAACAGGTCAGATGTAAATTTGTTAATTTAACAAGATGGAAGGTTGCTATATGTGGCGAGTATAAGAAATCACGCTACGAGACTTGTTCTCGTGGAACAGCCTGCAATTTTATCCACTGTTTCCGTAATCCCGGTGGAGACTATGACTGGGCAGATTCTGACAGACCACCCCCAAAATTTTGGGTTGACGAGATGGTTGCTTTATTTGGTCATTCTGATGATTATGAGATCCCGAGGATTCATGACAAATCTAGTGCACTGAAGCACTCCAACAATGTCTCAGAAACAGATTCTGACAGGTATCACTCAAGAAGATCTAAGTCTAGAGAGATAAATCAATCTAATGGTGGTCGTTCTGATAGAAGAAAACATGAAGATGAAACAAAACAAAGAACTCATGCCGAGGAGTGGAATACCGACTTTAAAGGCAACCATAAAAGGAAGCGCAGGAACAGAACTCCTGATATTGATTCTGACATGGAATGGTTAGAAGAGAAAGATAGGGAAAAATATCATGAACACAGAAGGAAAAGCTCATTTAATACGATTAAAGATGACAGTAGCGGAAGGCGTGATGAGTATTCTGAGGTGGATAGAGCAACTGTAAACAGGGACCATGAAAAGCAGCATGATAGAAAAAGAAGGAACTCACGAATGTCGGATTGGGATAGTAGGGACTGTACTTATGAGGCTGGATCTGATGAGGATAGTAATAGAAGAAGGCACCGAAGTAGCCAAAGGAAAGGATCAAGACATCAGGGCAGAGACAACAATAATGTAACTGATGAGCCTGACAAAAATAGAGGCCATGAAGAGTATTCTGATGTGGATTGGGATACCATGACTGAGGACAATGAAAAGCAATATGACAGCAAAGAAATGAACTCGCAAAAGCGAAACAAGGATAGTAGGCGGCATCAGACTTATGAGGCTGGATCAAATGAGGATCGACATAGAAAAAGGCACCACAGTAGGCAAATGAAGGAGTCTAGACACATGAGCATGGACGAGGACTGTGTAATTGATAAATCTGACAAAGATAGAGGAGAGATGGAAACGCAACATTACTCAAGGAAAAGCTCGAGACACAAAAGATCTGGTCTTCGGGACGACAATGTTATGGGTTGCATATGCTCCAAGGGAAAATCAAGTGATGATTTCGTCGCCGAAAATCGCAGAGAATTGAAGACTAAGAATAGGAAATCATCTAAGCGTTTGGTTGTGAATAGCAGGGAAAATGATGCTGCAACTACACACCTCATATCAAACGCGTATCGTGATTCATCCGATGAAGGAGAGAAAGAAAAAGAAATTCATATTACGAGAGAAGGAACAGGATCAGAAGAAGACATTAAGAAGATAATCAGAAGCTTGAGTGTCAAGAGCAATGGCGAAAGGCCGTCGATTGTTGTCGAAGGTTGGCCTTCTTGGCTCACTGCCGTTGCCGGTGAAGCCATCGTCGGTTGGGTTCCTCGTAGAGCAGACTCTTTTCACAAATTAGATAAGATTGGACAGGGAACTTATAGCAGTGTTTATCGAGCGCGTGATCTCGAGACGAACAAAATTGTTGCTTTGAAGAAGGTGAAATTTACTAATATGGATCCGGAAAGTGTTCGTTTTATGGCGAGGGAAATTATTCTTCTGCGGAAGCTTGATCATCCAAATGTCATGAAACTTGAAGGGATTATTACTTCAAGGCTTTCGGGTAGTTTGTACCTTATTTTTGAATATATGGAACATGATCTTACTGGCCTTGCGACATTGCCTCGCAACAAGTTTACCGAAGCACAGATCAAGTGTTATATGCAACAGCTTCTTCGCGGTCTTGAGCATTGTCACAGTCGGGGTGTTATGCATCGTGACATCAAGGGCTCAAATCTTCTGCTTGACAATAATGGCAATCTGAAGATTGGTGATTTTGGACTTGCAACTCTGTTTCAGCCATCTCAAGAACAGCCTTTAACAAGCCGTGTAGTAACCTTGTGGTACCGGCCACCTGAACTTTTGCTTGGAGCTACAAGCTATGACGTTGCTGTGGATTTGTGGAGTGCTGGTTGTATTCTTGCAGAACTGTTAGCCGGAAAACCTATAATGCCTGGACGAACTGAGGTGGAGCAACTGCATAAAATCTTCAAACTTTGTGGATCTCCTTCTGAAGAATACTGGAAGAAGACAAAGCTACCACATGCGACAATTTTTAAACCTCAACAGCCTTACAAACGCATTCTTTCTGAGACATTCAAGGATTTTCCTTCATCAGCACTGAGTCTCTTGGAGGTCCTACTTGCTATTGAACCAAAAGATCGAGGAACTGCATCTTCAGCGCTTCAGAATGAGTTCTTCACATCAAAGCCACTTCCTTGTGATCCATCGACTTTACCAAAGTACTCACCGAGTAAGGAGTTTGATGCCAAACTTCGTGAAGAGGAAGCTAGAAGACGGCGAACAGCAAATAAAGGACATGGACAGGATTTAGCTGGAAGGAGTTTTAAAGAGTCTAAGGTTGTACCAGCACCTGACGCAAATGGTGAGCTTCAGGCATCAATAGAGAAGAGAGGAGGGCGGTGTAATTCAAAACGCAACAGTGAGAAGTACAATCCTGAAGAGGAAGGAGGTTATGGCTTCCATCTCGAATCTGCTAAGGCAGTGGCACATAATACGTTATCTCATTCAGGCCAGTTAAGGCATCCAGGTGCATATGGATCGTCTTGCAATATGAATTTGAAAGAGGAAACTGTTCTTGCAGCCCCTGATCGTGTCTTTACATCAAAACACTCTAAACTGAGAAAACAAAATTCCTGCTGGCAAGGTAGCACTGCACAGTTGTCAAGATTTTCTAATTCAGTTGCAGTTCGAGGTGATTCACAGCTTGATATGAGTAGAGACTGTAGTTCGAATTCACAGTGGCTAGAAGATCACTTCGATTTGAGATATAGTCATTTGAACAATGGTGAGTCCAATCAAATGCTGGATGAAACCAAACATTTATGCAAGAAAGACTTCCATCTATTGGGAAAGGATCGTGCCATGGGTAATGCTCCCAAAAATGGGCACATCAACTATTCTGGGCCCTTACTGCCTCCAGAGGCTAATTTTGAAGAGATCCTCAAGGAGCATGAAAGACAAATCCAACAAGCTGTGCGCAAAGCTCGTCTGGTCAAGGACAAGAATAAAAAGGCTGCCAGTGAGATTGGGCAATCTGAAACACTAGTTCACCAAATGAGATATGGCAAGTCACATATCAAAGAGTTTTGA 4248 0.4258 MNEGLRIMEEGKEKLNLEMESRKEKRKAMKKMKRKERRKEIAEMERLEEEARLNDPEEQRKRMLLEQQEAERIERDRIAFEEREKAWIIKQQEAQLLEQEKSQQQQHDSTDNNDVVEEEEAEEEDEDGPPEIIWLGNEIIIKKKKPNPNFLLHHQEHDHDRDDDGAGTDNNRPTSNPFPPESPSQSRSSRSNSAVIENVAQQIPNFGTELDKAHCPFHLKTGVCRFGDRCSRVHFYPDKSCTFVIKNMYNGPGLAWEQDEGLEYTDEEIQRCFEEFYEDVHTEFLKFGEIVNFKVCRNGSFHLRGNVYVQYKLLDSALLAYNAINGRYFAGKQVRCKFVNLTRWKVAICGEYKKSRYETCSRGTACNFIHCFRNPGGDYDWADSDRPPPKFWVDEMVALFGHSDDYEIPRIHDKSSALKHSNNVSETDSDRYHSRRSKSREINQSNGGRSDRRKHEDETKQRTHAEEWNTDFKGNHKRKRRNRTPDIDSDMEWLEEKDREKYHEHRRKSSFNTIKDDSSGRRDEYSEVDRATVNRDHEKQHDRKRRNSRMSDWDSRDCTYEAGSDEDSNRRRHRSSQRKGSRHQGRDNNNVTDEPDKNRGHEEYSDVDWDTMTEDNEKQYDSKEMNSQKRNKDSRRHQTYEAGSNEDRHRKRHHSRQMKESRHMSMDEDCVIDKSDKDRGEMETQHYSRKSSRHKRSGLRDDNVMGCICSKGKSSDDFVAENRRELKTKNRKSSKRLVVNSRENDAATTHLISNAYRDSSDEGEKEKEIHITREGTGSEEDIKKIIRSLSVKSNGERPSIVVEGWPSWLTAVAGEAIVGWVPRRADSFHKLDKIGQGTYSSVYRARDLETNKIVALKKVKFTNMDPESVRFMAREIILLRKLDHPNVMKLEGIITSRLSGSLYLIFEYMEHDLTGLATLPRNKFTEAQIKCYMQQLLRGLEHCHSRGVMHRDIKGSNLLLDNNGNLKIGDFGLATLFQPSQEQPLTSRVVTLWYRPPELLLGATSYDVAVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIFKLCGSPSEEYWKKTKLPHATIFKPQQPYKRILSETFKDFPSSALSLLEVLLAIEPKDRGTASSALQNEFFTSKPLPCDPSTLPKYSPSKEFDAKLREEEARRRRTANKGHGQDLAGRSFKESKVVPAPDANGELQASIEKRGGRCNSKRNSEKYNPEEEGGYGFHLESAKAVAHNTLSHSGQLRHPGAYGSSCNMNLKEETVLAAPDRVFTSKHSKLRKQNSCWQGSTAQLSRFSNSVAVRGDSQLDMSRDCSSNSQWLEDHFDLRYSHLNNGESNQMLDETKHLCKKDFHLLGKDRAMGNAPKNGHINYSGPLLPPEANFEEILKEHERQIQQAVRKARLVKDKNKKAASEIGQSETLVHQMRYGKSHIKEF 1415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g08822 1415 Pfam Protein kinase domain 828 1112 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g08822 1415 MobiDBLite consensus disorder prediction 757 776 - -
Vivi1g08822 1415 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 241 341 IPR000504 GO:0003723
Vivi1g08822 1415 MobiDBLite consensus disorder prediction 169 192 - -
Vivi1g08822 1415 Gene3D Phosphorylase Kinase; domain 1 815 910 - -
Vivi1g08822 1415 Coils Coil 5 54 - -
Vivi1g08822 1415 MobiDBLite consensus disorder prediction 150 168 - -
Vivi1g08822 1415 ProSitePatterns Protein kinases ATP-binding region signature. 834 857 IPR017441 GO:0005524
Vivi1g08822 1415 ProSiteProfiles Zinc finger C3H1-type profile. 209 237 IPR000571 GO:0046872
Vivi1g08822 1415 SMART rrm2_1 271 337 IPR003954 GO:0003676
Vivi1g08822 1415 MobiDBLite consensus disorder prediction 98 132 - -
Vivi1g08822 1415 MobiDBLite consensus disorder prediction 581 648 - -
Vivi1g08822 1415 SMART serkin_6 828 1112 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g08822 1415 CDD RRM_U2AFBPL 242 340 - -
Vivi1g08822 1415 MobiDBLite consensus disorder prediction 113 131 - -
Vivi1g08822 1415 ProSiteProfiles Zinc finger C3H1-type profile. 343 373 IPR000571 GO:0046872
Vivi1g08822 1415 MobiDBLite consensus disorder prediction 1120 1202 - -
Vivi1g08822 1415 MobiDBLite consensus disorder prediction 749 776 - -
Vivi1g08822 1415 ProSiteProfiles Protein kinase domain profile. 828 1112 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g08822 1415 SUPERFAMILY RNA-binding domain, RBD 273 341 IPR035979 GO:0003676
Vivi1g08822 1415 SMART c3hfinal6 210 236 IPR000571 GO:0046872
Vivi1g08822 1415 SMART c3hfinal6 343 372 IPR000571 GO:0046872
Vivi1g08822 1415 ProSitePatterns Serine/Threonine protein kinases active-site signature. 948 960 IPR008271 GO:0004672|GO:0006468
Vivi1g08822 1415 SUPERFAMILY Protein kinase-like (PK-like) 821 1120 IPR011009 -
Vivi1g08822 1415 Coils Coil 1360 1387 - -
Vivi1g08822 1415 MobiDBLite consensus disorder prediction 1131 1159 - -
Vivi1g08822 1415 Gene3D - 240 339 IPR012677 -
Vivi1g08822 1415 FunFam probable serine/threonine-protein kinase At1g54610 815 910 - -
Vivi1g08822 1415 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 344 371 IPR000571 GO:0046872
Vivi1g08822 1415 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 215 234 IPR000571 GO:0046872
Vivi1g08822 1415 MobiDBLite consensus disorder prediction 1184 1202 - -
Vivi1g08822 1415 MobiDBLite consensus disorder prediction 413 484 - -
Vivi1g08822 1415 MobiDBLite consensus disorder prediction 413 474 - -
Vivi1g08822 1415 PRINTS U2 auxiliary factor small subunit signature 363 375 IPR009145 GO:0000398|GO:0003723|GO:0089701
Vivi1g08822 1415 PRINTS U2 auxiliary factor small subunit signature 270 285 IPR009145 GO:0000398|GO:0003723|GO:0089701
Vivi1g08822 1415 PRINTS U2 auxiliary factor small subunit signature 215 234 IPR009145 GO:0000398|GO:0003723|GO:0089701
Vivi1g08822 1415 PRINTS U2 auxiliary factor small subunit signature 325 349 IPR009145 GO:0000398|GO:0003723|GO:0089701
Vivi1g08822 1415 PRINTS U2 auxiliary factor small subunit signature 234 254 IPR009145 GO:0000398|GO:0003723|GO:0089701
Vivi1g08822 1415 PRINTS U2 auxiliary factor small subunit signature 298 320 IPR009145 GO:0000398|GO:0003723|GO:0089701
Vivi1g08822 1415 MobiDBLite consensus disorder prediction 498 698 - -
Vivi1g08822 1415 Gene3D Transferase(Phosphotransferase) domain 1 911 1152 - -
Vivi1g08822 1415 CDD STKc_CDK9_like 828 1112 - -
Vivi1g08822 1415 MobiDBLite consensus disorder prediction 498 573 - -
Vivi1g08822 1415 FunFam Zinc finger CCCH domain-containing protein 5 242 339 - -
Vivi1g08822 1415 MobiDBLite consensus disorder prediction 150 192 - -
Vivi1g08822 1415 MobiDBLite consensus disorder prediction 660 688 - -
Vivi1g08822 1415 PANTHER CELL DIVISION PROTEIN KINASE 826 1118 - -
Vivi1g08822 1415 FunFam probable serine/threonine-protein kinase At1g54610 911 1152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g08822 Vivi-Chr1 251966715 251983462 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g08822 820 1150 Core Cell Cycle Gene Families AT5G10270 50.578 4.81e-108 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Vivi1g08822 Pkinase 1e-70 CL0016
TF C3H Vivi1g08822 Pkinase 1e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g08822 - - vvo:131599220 2729.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g08822 1 251966715 251983462 Vivi1g08822 1 251966715 251983462 ECH