Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g08821 ATGGATCATCAGTGGGAGGCAGACGAAGCAGATGAAAGAATTGAGATTGGCGGCGACGGCGACCATGACGACGGTGATGATGATCAGAAACAACCGTTGCTGGTTCGACGGAGAACCAATGTATCTTCTCAACTCGCCATCGTTGGAGCCAATAAATCTCCAATTCAAAGTCTTGATTACGAGATGATTGAGAATGATCTATTGAAGCAGGACTGGAGGTCAAGAACAAAGGTTGAGATATACCAATATGTTACTCTCAAGTGGACCCTTGCACTTCTTATTGGTTTAATTACAGGACTTGTTGGCTTCTTTAACAACCTTGGAGTTGAAAATATTGCTGGTTTCAAACTTCTACTAACTAATAATCTCATGCTCAAGCAAAAGTATCATCAAGCATTTGCAGTCTACTTTGGCTGTAACATGATTTTAGGGGTTGGCGCCGCAGCTCTCTGTGCTTACATTGCCCCTGCAGCCGCAGGTTCCGGTATACCAGAGGTCAAGGCATACCTCAATGGCATTGATGCACATTCTATATTGGCTCCATCTACCCTCTTTGTCAAGATATTTGGTTCGATTTTAGGAGTTGCTGGTGGTTTTATTGTGGGGAAAGAAGGACCTATGGTACATACAGGTGCTTGCATTGCTAATTTACTCGGACAAGGTGGTTCTCGTAAATATAGACTCACTTGGAGATGGCTCAGATACTTCAAAAACGATAGAGATCGAAGGGATTTGATCACGTGCGGTGCAGCTGCAGGTGTTGCAGCTGCCTTCCGTGCCCCCGTTGGAGGAGTCCTTTTCGCGCTCGAAGAAGCAGCTTCGTGGTGGAGGAGCGCTCTTCTGTGGCGCACGTTTTTCACCACAGCGGTTGTAGCAGTTGTTTTTAGGGGTCTTACCCAATTTTGCCATCAAGGAGGAGGCAAATGTGGTCTATTTGGAGAAGGAGGACTCATCATGTTTGATGTCAATTCATTAGAGCCGGCCTACACCACACCCGACCTACTCGCAGTTATATTTCTTGGAGTCATTGGTGGTCTCATGGGAAGCTTGTACAATTATCTTGTCGACAAAGTCCTTCGCACTTACACCACCATAAATGGGAAAGGTCCTATATTCAAAATTCTACTAGTGATGGTTATCTCGTTTATGACCTCTTGTATTCGATTTGGGCTACCGTTGCTATCAAAGTGTGTGCCATGTCCAGGAGAGTGCCCGAACTCATCATCCGCGGGCTTTTCGTTACACTATGACAGTTTTCAGTGTCCACCAAACCACTTCAACGATCTCAGCTCTCTCCTTTTCACTACCAACGACGATGCCATCCGCAAACTATTCATCGATAGCTCTGAATCTTCCAACGCTGCATTTCAATTATCAAGTCTCATAATTTTCTTCGTGGCGATATACTTGCTTGGAATTGTCACATACGGTGTTGCCATTCCCTCTGGTCTCTTCATTCCTGTCATACTTGCAGGAGCTTCATACGGGCGTCTAGTAGGGACCGTGTTAAATCCATTCACGGATCTCGATGCAGGCTATTTCGCTCTCCTCGGAGCTGCATCTTTCCTCGGTGGCACCATGAGAATGACAGTTTCTCTCTGCGTCATACTTCTCGAACTCACTAACAACTTGTTGATGCTCCCATTAGTTATGCTGGTTCTCCTTGTTTCTAAAACAGTGGCGGATTGTTTCAACAAAGGTGTTTATGATCAGATTGTGATGTTGAAAGGACTTCCTTTCATGGAGGCACATGCAGAGCCATACATGAAGAATTTAGTCGCAGGCGATGTTGTATCCTGTCCACTCTTTACTTTCTGCGGAATCGAGAAAGTTGGTAACATTGTCCATGCATTAAAAGTGACAGGACATCACGGCTTTCCTGTGATCGACGAGCCGCCTTTAACCGATGCTCCCGAGTTATGCGGTTTGGTGTTGAGGTCTCATCTGCTAGTACTTCTCAAGCACAAGACATTGTTCACTAGGAAGAGAGTTATGACAAGGTCTACCATTATTAATAAGTTGAAGGCAAGTGATTTCGCGAAACCGGGTTTAGGGAGAGGGATAACTCTGGAAGATTTAGAAATATCTCAAGAGGATATGGAAATGTTTGTTGATCTTCATCCAATAACTAACAAATCTCCATATACTGTTGTTGAAACAATGTCTCTTGCAAAAGCTGCTCTTCTTTTTAGGGAACTTGGACTCAGACACTTGCTAGTTGTGCCCAAGATACCAGGAAGGCCTCCAATTGTTGGGATCCTAACAAGACATGATTTCATGCCAGAGTATATTTTGGGGCTATTCCCTAGCTTGAATCCACACAAGTAG 2328 0.4463 MDHQWEADEADERIEIGGDGDHDDGDDDQKQPLLVRRRTNVSSQLAIVGANKSPIQSLDYEMIENDLLKQDWRSRTKVEIYQYVTLKWTLALLIGLITGLVGFFNNLGVENIAGFKLLLTNNLMLKQKYHQAFAVYFGCNMILGVGAAALCAYIAPAAAGSGIPEVKAYLNGIDAHSILAPSTLFVKIFGSILGVAGGFIVGKEGPMVHTGACIANLLGQGGSRKYRLTWRWLRYFKNDRDRRDLITCGAAAGVAAAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAVVFRGLTQFCHQGGGKCGLFGEGGLIMFDVNSLEPAYTTPDLLAVIFLGVIGGLMGSLYNYLVDKVLRTYTTINGKGPIFKILLVMVISFMTSCIRFGLPLLSKCVPCPGECPNSSSAGFSLHYDSFQCPPNHFNDLSSLLFTTNDDAIRKLFIDSSESSNAAFQLSSLIIFFVAIYLLGIVTYGVAIPSGLFIPVILAGASYGRLVGTVLNPFTDLDAGYFALLGAASFLGGTMRMTVSLCVILLELTNNLLMLPLVMLVLLVSKTVADCFNKGVYDQIVMLKGLPFMEAHAEPYMKNLVAGDVVSCPLFTFCGIEKVGNIVHALKVTGHHGFPVIDEPPLTDAPELCGLVLRSHLLVLLKHKTLFTRKRVMTRSTIINKLKASDFAKPGLGRGITLEDLEISQEDMEMFVDLHPITNKSPYTVVETMSLAKAALLFRELGLRHLLVVPKIPGRPPIVGILTRHDFMPEYILGLFPSLNPHK 775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g08821 775 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 26 765 - -
Vivi1g08821 775 FunFam Chloride channel ClC3 79 397 - -
Vivi1g08821 775 Pfam Voltage gated chloride channel 144 562 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vivi1g08821 775 ProSiteProfiles CBS domain profile. 710 770 IPR000644 -
Vivi1g08821 775 PRINTS Plant CLC chloride channel signature 61 69 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vivi1g08821 775 PRINTS Plant CLC chloride channel signature 272 280 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vivi1g08821 775 PRINTS Plant CLC chloride channel signature 286 296 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vivi1g08821 775 PRINTS Plant CLC chloride channel signature 429 445 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vivi1g08821 775 CDD ClC_6_like 56 581 - -
Vivi1g08821 775 Gene3D Clc chloride channel 79 581 - -
Vivi1g08821 775 SUPERFAMILY CBS-domain pair 585 761 IPR046342 -
Vivi1g08821 775 CDD CBS_pair_voltage-gated_CLC_euk_bac 594 762 - -
Vivi1g08821 775 Pfam CBS domain 711 759 IPR000644 -
Vivi1g08821 775 PRINTS Chloride channel signature 480 500 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vivi1g08821 775 PRINTS Chloride channel signature 187 206 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vivi1g08821 775 PRINTS Chloride channel signature 512 528 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vivi1g08821 775 PRINTS Chloride channel signature 568 582 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vivi1g08821 775 PRINTS Chloride channel signature 156 173 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vivi1g08821 775 PRINTS Chloride channel signature 530 549 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vivi1g08821 775 PRINTS Chloride channel signature 251 270 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vivi1g08821 775 Gene3D - 582 761 IPR046342 -
Vivi1g08821 775 MobiDBLite consensus disorder prediction 1 30 - -
Vivi1g08821 775 SUPERFAMILY Clc chloride channel 65 583 IPR014743 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g08821 Vivi-Chr1 251961495 251966414 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g08821 1 775 Ion Channels AT5G49890 72.589 0.0 1107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g08821 K05016 - jre:108988922 1093.57