Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g08818 ATGTCTGAAGAGGCTGGATCCATGTTGGTTGTTTACGACGATCCGTCGGACCAACACTCGTTGTCGTTAGGCGATACAAGCAGCACTGAGGAGTCACAGTCACTGGCACCTGCTGAAACCAGACTCTCTTTGGAACCAACTAACGACGACGACATTCCGTATATTGGTCTCAGGTTTCCGACTCATGATTCGGCTTATGAATTCTATAGTCATTTCGCCAAGAGGTGTGGTTTCTCTATTAGGCGTCATAGGACAGAGGGAAAAGACGGCGTTGGGAAAGGACTTACTAGACGGTACTTTGTTTGTCATCGTGCTGGTAATACTCCTGCTAAATCGTCCACCGAGAGTAAGCCTCAAAGGAATAGGAAGTCTTCTCGGTGTGGTTGTCAGGCTTATATGAGGATAAGTAAAACGACGGAGTTTGGACCTCCGGAGTGGCGGGTCACTGGTTTTGCGAATCATCATAATCATGAACTTTTGGAACCTAATCAGGTTCGGTTCCTTCCTGCGTATAGAACTATATCGGATGCTGACAAGAACCGGATCCTTATGTTTGCCAAAACTGGGATTTCTGTTCATCAAATGATGAGGCTTATGGAGCTTGAGAAGTGCGTGGAGCCTGGATATTTGCCTTTTACTGAAAAGGACGTGAGGAATTTACTTCAGTCGTTTAGAAAATTAGATCCGGAAGAAGAGAGTCTGGATTTGTTGAGAATGTGCAAAAATATTAAGGAGAAAGATCCTAATTTTAAATTTGAGTATACACTTGATGCAAATAACCGATTAGAAAATATTGCATGGTCGTATGCCTCTTCGATCCAATTGTATGATATCTTTGGGGATGCTGTGGTATTTGATACAACACATCGTCTGACTGCATTTGACATGCCGTTGGGGATATGGGTTGGAATAAATAATTATGGAATGCCCTGCTTCTTTGGCTGTGTGCTACTGCGAGATGAAACTGTCAGGTCATTTTCGTGGGCAATAAAGGCATTCTTAGGTTTTATGAATGGGAAGGCTCCACAGACTATATTAACTGACCAAAACATGTGTCTCAAAGAAGCGCTATCTGCAGAAATGCCGATAACAAAACATGCTTTCTGTATATGGATGATAGTAGCAAAGTTTCCATCTTGGTTCAATGCTGTTCTAGGGGAACGCTACAATGAGTGGAAGGCTGAATTTTATAGACTTTATAATCTTGAATCAGTTGATGATTTTGAACTAGGCTGGAGGGAAATGGTCTGTTCTTTTGGGCTGCATTCCAATCGGCACATGCTTAATTTATATAGCTCGCGCTCACTTTGGGCATTGCCATATTTAAGAAGCCATTTTCTTGCGGGAATGACTACAACTGGTCAGTCAAAGTCAATTAATGCCTTCATTCAACGGTTTTTAAGCGCACAGACACGACTTGCTCACTTTGTTGAACAGGTAGCTGTTGCTGTGGATTTTAAAGATCAAACTGGAGAACAACAAACCATGCAGCAGAATCTACAAAATGTTTGCCTCAAAACAGGAGCTCCCATGGAATCGCACGCTGCTACAGTCCTCACTCCTTTTGCCTTTTCAAAGCTTCAAGAACAACTTGTGTTGGCCGCACATTATGCGTCTTTTTCAGTGGAGGACGGGTTTCTTGTGAGACATCACACAAAAGTTGAAGGAGGTCGCAAAGTTTATTGGTCCTCTCAAGAAGGAATTATTAGCTGCAGCTGTCACCAGTTTGAATTTTCTGGAATTTTGTGTAGGCACTCTCTGAGAGTTCTTTCAACAGGAAATTGCTTTCAGATCCCGGATACATATCTTCCCATCCGATGGCGTCGTATCAGCGTGCCTTCTTCAAAGCTTCTTCAACATGCATCCAGTGATCATGCCGAAAGAGTTAAGCTATTCCAGAATATGGTTTCATCTCTAATTACAGAATCTGCCAAGTCTAAAGAACGATTAGATGTTGCTACAGAACAAGTTTCCATTCTTCTGTCTCGCATTAGAGAGCAACCCATTTCATTACAATGTGCCAGAGATATTTCTACCATTAATAGGAATCTATGA 2055 0.4234 MSEEAGSMLVVYDDPSDQHSLSLGDTSSTEESQSLAPAETRLSLEPTNDDDIPYIGLRFPTHDSAYEFYSHFAKRCGFSIRRHRTEGKDGVGKGLTRRYFVCHRAGNTPAKSSTESKPQRNRKSSRCGCQAYMRISKTTEFGPPEWRVTGFANHHNHELLEPNQVRFLPAYRTISDADKNRILMFAKTGISVHQMMRLMELEKCVEPGYLPFTEKDVRNLLQSFRKLDPEEESLDLLRMCKNIKEKDPNFKFEYTLDANNRLENIAWSYASSIQLYDIFGDAVVFDTTHRLTAFDMPLGIWVGINNYGMPCFFGCVLLRDETVRSFSWAIKAFLGFMNGKAPQTILTDQNMCLKEALSAEMPITKHAFCIWMIVAKFPSWFNAVLGERYNEWKAEFYRLYNLESVDDFELGWREMVCSFGLHSNRHMLNLYSSRSLWALPYLRSHFLAGMTTTGQSKSINAFIQRFLSAQTRLAHFVEQVAVAVDFKDQTGEQQTMQQNLQNVCLKTGAPMESHAATVLTPFAFSKLQEQLVLAAHYASFSVEDGFLVRHHTKVEGGRKVYWSSQEGIISCSCHQFEFSGILCRHSLRVLSTGNCFQIPDTYLPIRWRRISVPSSKLLQHASSDHAERVKLFQNMVSSLITESAKSKERLDVATEQVSILLSRIREQPISLQCARDISTINRNL 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g08818 684 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 45 660 IPR031052 GO:0006355
Vivi1g08818 684 SMART 26again6 569 596 IPR006564 GO:0008270
Vivi1g08818 684 MobiDBLite consensus disorder prediction 1 47 - -
Vivi1g08818 684 Pfam MULE transposase domain 283 375 IPR018289 -
Vivi1g08818 684 MobiDBLite consensus disorder prediction 19 41 - -
Vivi1g08818 684 Pfam SWIM zinc finger 555 592 IPR007527 GO:0008270
Vivi1g08818 684 Pfam FAR1 DNA-binding domain 67 160 IPR004330 -
Vivi1g08818 684 ProSiteProfiles Zinc finger SWIM-type profile. 558 594 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g08818 Vivi-Chr1 251898892 251901878 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vivi1g08818 MULE 7.2e-18 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g08818 - - gmx:100810717 1291.17