Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g08817 ATGTCTGAAGAGGCTGGATCCATGTTGGTTGTTTACGACGATCCGTCGGACCAACACTCGTTGTCGTTAGGCGATACAAGCAGCACTGAGGAGTCACAGTCACTGGCACCTGCTGAAACCAGACTCTCTTTGGAACCAACTAACGACGACGACATTCCGTATATTGGTCTCAGGTTTCCGACTCATGATTCGGCTTATGAATTCTATAGTCATTTCGCCAAGAGGTGTGGTTTCTCTATTAGGCGTCATAGGACAGAGGGAAAAGACGGCGTTGGGAAAGGACTTACTAGACGGTACTTTGTTTGTCATCGTGCTGGTAATACTCCTGCTAAATCGTCCACCGAGAGTAAGCCTCAAAGGAATAGGAAGTCTTCTCGGTGTGGTTGTCAGGCTTATATGAGGATAAGTAAAACGACGGAGTTTGGACCTCCGGAGTGGCGGGTCACTGGTTTTGCGAATCATCATAATCATGAACTTTTGGAACCTAATCAGGTTCGGTTCCTTCCTGCGTATAGAACTATATCGGATGCTGACAAGAACCGGATCCTTATGTTTGCCAAAACTGGGATTTCTGTTCATCAAATGATGAGGCTTATGGAGCTTGAGAAGTGCGTGGAGCCTGGATATTTGCCTTTTACTGAAAAGGACGTGAGGAATTTACTTCAGTCGTTTAGAAAATTAGATCCGGAAGAAGAGAGTCTGGATTTGTTGAGAATGTGCAAAAATATTAAGGAGAAAGATCCTAATTTTAAATTTGAGTATACACTTGATGCAAATAACCGATTAGAAAATATTGCATGGTCGTATGCCTCTTCGATCCAATTGTATGATATCTTTGGGGATGCTGTGGTATTTGATACAACACATCGTCTGACTGCATTTGACATGCCGTTGGGGATATGGGTTGGAATAAATAATTATGGAATGCCCTGCTTCTTTGGCTGTGTGCTACTGCGAGATGAAACTGTCAGGTCATTTTCGTGGGCAATAAAGGCATTCTTAGGTTTTATGAATGGGAAGGCTCCACAGACTATATTAACTGACCAAAACATGTGTCTCAAAGAAGCGCTATCTGCAGAAATGCCGATAACAAAACATGCTTTCTGTATATGGATGATAGTAGCAAAGTTTCCATCTTGGTTCAATGCTGTTCTAGGGGAACGCTACAATGAGTGGAAGGCTGAATTTTATAGACTTTATAATCTTGAATCAGTTGATGATTTTGAACTAGGCTGGAGGGAAATGGTCTGTTCTTTTGGGCTGCATTCCAATCGGCACATGCTTAATTTATATAGCTCGCGCTCACTTTGGGCATTGCCATATTTAAGAAGCCATTTTCTTGCGGGAATGACTACAACTGGTCAGTCAAAGTCAATTAATGCCTTCATTCAACGGTTTTTAAGCGCACAGACACGACTTGCTCACTTTGTTGAACAGTTTGATTTGCACAACCAGGTAGCTGTTGCTGTGGATTTTAAAGATCAAACTGGAGAACAACAAACCATGCAGCAGAATCTACAAAATGTTTGCCTCAAAACAGGAGCTCCCATGGAATCGCACGCTGCTACAGTCCTCACTCCTTTTGCCTTTTCAAAGCTTCAAGAACAACTTGTGTTGGCCGCACATTATGCGTCTTTTTCAGTGGAGGACGGGTTTCTTGTGAGACATCACACAAAAGTTGAAGGAGGTCGCAAAGTTTATTGGTCCTCTCAAGAAGGAATTATTAGCTGCAGCTGTCACCAGTTTGAATTTTCTGGAATTTTGTGTAGGCACTCTCTGAGAGTTCTTTCAACAGGAAATTGCTTTCAGATCCCGGATACATATCTTCCCATCCGATGGCGTCGTATCAGCGTGCCTTCTTCAAAGCTTCTTCAACATGCATCCAGTGATCATGCCGAAAGAGTTAAGCTATTCCAGAATATGGTTTCATCTCTAATTACAGAATCTGCCAAGTCTAAAGAACGATTAGATGTTGCTACAGAACAAGTTTCCATTCTTCTGTCTCGCATTAGAGAGCAACCCATTTCATTACAATGTGCCAGAGATATTTCTACCATTAATAGGAATCTATGA 2073 0.4231 MSEEAGSMLVVYDDPSDQHSLSLGDTSSTEESQSLAPAETRLSLEPTNDDDIPYIGLRFPTHDSAYEFYSHFAKRCGFSIRRHRTEGKDGVGKGLTRRYFVCHRAGNTPAKSSTESKPQRNRKSSRCGCQAYMRISKTTEFGPPEWRVTGFANHHNHELLEPNQVRFLPAYRTISDADKNRILMFAKTGISVHQMMRLMELEKCVEPGYLPFTEKDVRNLLQSFRKLDPEEESLDLLRMCKNIKEKDPNFKFEYTLDANNRLENIAWSYASSIQLYDIFGDAVVFDTTHRLTAFDMPLGIWVGINNYGMPCFFGCVLLRDETVRSFSWAIKAFLGFMNGKAPQTILTDQNMCLKEALSAEMPITKHAFCIWMIVAKFPSWFNAVLGERYNEWKAEFYRLYNLESVDDFELGWREMVCSFGLHSNRHMLNLYSSRSLWALPYLRSHFLAGMTTTGQSKSINAFIQRFLSAQTRLAHFVEQFDLHNQVAVAVDFKDQTGEQQTMQQNLQNVCLKTGAPMESHAATVLTPFAFSKLQEQLVLAAHYASFSVEDGFLVRHHTKVEGGRKVYWSSQEGIISCSCHQFEFSGILCRHSLRVLSTGNCFQIPDTYLPIRWRRISVPSSKLLQHASSDHAERVKLFQNMVSSLITESAKSKERLDVATEQVSILLSRIREQPISLQCARDISTINRNL 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g08817 690 SMART 26again6 575 602 IPR006564 GO:0008270
Vivi1g08817 690 MobiDBLite consensus disorder prediction 1 47 - -
Vivi1g08817 690 Pfam MULE transposase domain 283 375 IPR018289 -
Vivi1g08817 690 Pfam SWIM zinc finger 561 598 IPR007527 GO:0008270
Vivi1g08817 690 Pfam FAR1 DNA-binding domain 67 160 IPR004330 -
Vivi1g08817 690 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 45 666 IPR031052 GO:0006355
Vivi1g08817 690 MobiDBLite consensus disorder prediction 19 41 - -
Vivi1g08817 690 ProSiteProfiles Zinc finger SWIM-type profile. 564 600 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g08817 Vivi-Chr1 251898892 251901880 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vivi1g08817 MULE 7.3e-18 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g08817 - - gmx:100810717 1284.63